PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00023050-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

M-type_MADS

Protein Properties

Length: 102aa MW: 11705 Da PI: 10.3498

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00023050-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.2	4.4e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+k+ rqvtfskR+ g++KKA EL vLCd+eva++ifs +g+lye+ss WALNUT_00023050-RA 9 KRIEDKTSRQVTFSKRKGGLMKKARELAVLCDVEVALMIFSDRGRLYEFSS 59 79***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.427	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.6E-37	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.18E-36	2	59	No hit	No description
SuperFamily	SSF55455	1.57E-28	2	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.8E-29	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.6E-26	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.8E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.8E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 102 aa Download sequence Send to blast
MGRGKVQMKR IEDKTSRQVT FSKRKGGLMK KARELAVLCD VEVALMIFSD RGRLYEFSSA 60 ERLVFLELSH TLPFKRNDFL IFELILAFKS VVSVLCSCFP VP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1tqe_P	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_Q	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_R	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
1tqe_S	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_A	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_B	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_C	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_D	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_E	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
6c9l_F	8e-20	1	61	1	61	Myocyte-specific enhancer factor 2B
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Functional Description ? help Back to Top
Source	Description
UniProt	MADS-box transcription factor that acts redundantly with EJ2 to control meristem maturation and inflorescence architecture. {ECO:0000269\|PubMed:28528644}.
UniProt	Probable transcription factor.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ829074	3e-96	JQ829074.1 Carya cathayensis flowering locus C-like protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018815444.1	5e-35	PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
Swissprot	K4DEK0	3e-25	J2_SOLLC; MADS-box protein J2
Swissprot	Q8RU31	3e-25	MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBL	I6QQB8	1e-34	I6QQB8_9ROSI; Flowering locus C-like protein 1
STRING	EOX99786	3e-28	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	4e-27	MIKC_MADS family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Dreni L, et al. The D-lineage MADS-box gene OsMADS13 controls ovule identity in rice. Plant J., 2007. 52(4): p. 690-9 [PMID:17877710] Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Soyk S, et al. Bypassing Negative Epistasis on Yield in Tomato Imposed by a Domestication Gene. Cell, 2017. 169(6): p. 1142-1155.e12 [PMID:28528644]