PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023063-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 335aa    MW: 37482.5 Da    PI: 5.7668
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023063-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.4e-28958150
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                        krien++nrqvtfskRrng+ KKA+ELS+LCd+++a+i+fs++g+l  +s
  WALNUT_00023063-RA  9 KRIENNTNRQVTFSKRRNGLVKKAYELSILCDIDIALIMFSPSGRLTHFS 58
                        79********************************************9997 PP
2K-box13.23.9e-061181464775
               K-box  47 slkeLqqLeqqLekslkkiRskKnellle 75 
                         s++eL++ e++L ++l++++++K++l+++
  WALNUT_00023063-RA 118 SMEELESCENNLLEALRRVKQRKEDLIIS 146
                         79**********************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.296161IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-37160IPR002100Transcription factor, MADS-box
CDDcd002657.09E-35272No hitNo description
SuperFamilySSF554553.14E-29279IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.4E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004043.3E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRVKLPIKR IENNTNRQVT FSKRRNGLVK KAYELSILCD IDIALIMFSP SGRLTHFSGK  60
RRIEDVLTRY INMPDHERGG VVQNREFLLG TLKKLKTENG IALQLAKIFE PDLVLPKSME  120
ELESCENNLL EALRRVKQRK EDLIISNHLS AYQYPSSVQM YLDTKDGPVL PTSFENEAVN  180
WFPENNGHNQ NQICVGSEPS SCIPLRNQSS TEIYNQVDVG NATNIKMEAC NMQGAAGCHI  240
GNINPGSHDH DDDHVDGLPS WHHSFTASEL LSALMPQTSF QLPPMMKEIA GTSCLSSMMS  300
QQQAVEIASN CPPILLQSSD EDNANYDMNT LHALD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-16194190MEF2 CHIMERA
6bz1_B2e-16194190MEF2 CHIMERA
6bz1_C2e-16194190MEF2 CHIMERA
6bz1_D2e-16194190MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133140RRVKQRKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018838782.10.0PREDICTED: agamous-like MADS-box protein AGL104 isoform X2
SwissprotQ1PFC23e-57AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A2I4G4F00.0A0A2I4G4F0_JUGRE; agamous-like MADS-box protein AGL104 isoform X2
STRINGEOX921921e-119(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-53AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]