PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023165-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 182aa    MW: 20310.7 Da    PI: 5.9451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023165-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.6e-191666155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa+a++ a+  ++g
  WALNUT_00023165-RA 16 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAAAAYDVAAFHFRG 66
                        67*****999.**********8...557**********************99988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.5E-121666IPR001471AP2/ERF domain
SuperFamilySSF541716.02E-231675IPR016177DNA-binding domain
SMARTSM003801.6E-401780IPR001471AP2/ERF domain
PROSITE profilePS5103223.8281774IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-321775IPR001471AP2/ERF domain
CDDcd000182.33E-231876No hitNo description
PRINTSPR003673.7E-101829IPR001471AP2/ERF domain
PRINTSPR003673.7E-104056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MGEPNISSST ISSASSSYRG VRKRKWGKWV SEIREPGKKT RIWLGSFETP EMAAAAYDVA  60
AFHFRGREAR LNFPELVNSL PRPASSDAED IRMTAHEAAL RLKGPASGRA HHHHELVGGP  120
SLNVAPVTVR LSPSQIQTIN EFPLDSPKMW MQMAVEDSIP AFSNEIEDNE WEDTQNDSLW  180
DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-191879668ATERF1
3gcc_A5e-191879668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018849492.11e-132PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I22e-64ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2I4H0231e-131A0A2I4H023_JUGRE; ethylene-responsive transcription factor ERF021-like
STRINGXP_008219098.14e-81(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17773191
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.13e-59ERF family protein