PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00023391-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB

Protein Properties

Length: 178aa MW: 20223.2 Da PI: 10.1478

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00023391-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53	7.6e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+ eEd++l+d++ ++G g+W++I++ g+ R++k+c++r+ +yl WALNUT_00023391-RA 13 KGAWSREEDQKLIDYILKHGEGCWRSIPKAAGLPRCGKSCRLRYINYL 60 79****************************99**********97 PP
2	Myb_DNA-binding	53.1	7.3e-17	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ WALNUT_00023391-RA 66 RGNFGEDEEDLIIRLHTLLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 89******************.*****.*********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.9E-23	4	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.234	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	1.56E-28	12	107	IPR009057	Homeodomain-like
SMART	SM00717	4.6E-14	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	3.6E-15	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	6.72E-11	15	60	No hit	No description
PROSITE profile	PS51294	24.352	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-24	64	116	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-14	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	1.0E-14	66	110	IPR001005	SANT/Myb domain
CDD	cd00167	3.71E-10	68	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MRKPCCDKGE TNKGAWSREE DQKLIDYILK HGEGCWRSIP KAAGLPRCGK SCRLRYINYL 60 KPGLKRGNFG EDEEDLIIRL HTLLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLIQKGI 120 DPNKPHNYQL ARIEISSCSS TTAKSKFLSS KNQASKLPDL NLDLTLSTPS TRVEESKA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-28	10	115	24	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018813001.1	1e-129	PREDICTED: myb-related protein 308-like
Swissprot	P81393	2e-72	MYB08_ANTMA; Myb-related protein 308
TrEMBL	A0A2I4E0T0	1e-128	A0A2I4E0T0_JUGRE; myb-related protein 308-like
STRING	XP_010044170.1	6e-82	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF264	34	221

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	2e-71	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]