PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00023528-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

MYB_related

Protein Properties

Length: 211aa MW: 24323.1 Da PI: 4.8158

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00023528-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.7	2e-16	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l v ++G ++W++Iar g+ R++k+c++rw +yl WALNUT_00023528-RA 19 KGPWVEEEDERLTTFVSLMGERRWDSIARASGLQRSGKSCRLRWMNYL 66 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-19	14	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	22.826	14	70	IPR017930	Myb domain
SMART	SM00717	1.5E-13	18	68	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-14	19	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.8E-19	20	93	IPR009057	Homeodomain-like
CDD	cd00167	1.33E-10	21	66	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.0E-5	69	93	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MLQTTMAYQV AMQGGRLRKG PWVEEEDERL TTFVSLMGER RWDSIARASG LQRSGKSCRL 60 RWMNYLRPDL KHGQLSIDEE RIILQLHELW GNKLGNFHSK INNAEQDFFF HEQGGMTTVR 120 YQCGNKGSVD KDSWGTMNDI SSDALGFSDL QFTCSPYETR LSDWISGVSD DQSKIKHQED 180 CNTIESCCCY LAWISDNSNT WDYSGSLWDM D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-14	17	93	25	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018814795.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814796.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814797.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814798.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814799.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814800.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814801.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814802.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814803.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814805.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814806.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814807.1	1e-149	PREDICTED: transcription factor MYB59-like
Refseq	XP_018814808.1	1e-149	PREDICTED: transcription factor MYB59-like
TrEMBL	A0A2I4E5W9	1e-147	A0A2I4E5W9_JUGRE; transcription factor MYB59-like
STRING	XP_008350343.1	2e-65	(Malus domestica)
STRING	XP_008387530.1	2e-65	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13169	26	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	9e-44	myb domain protein 27