PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023638-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 338aa    MW: 37897.4 Da    PI: 8.7609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023638-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.41.1e-12162209355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  WALNUT_00023638-RA 162 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 209
                         6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.044159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-17162222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-10162209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-17163222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.60E-12164213No hitNo description
SMARTSM003531.2E-14165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MITRKISNLQ GMEDPRFINQ WHMNSVDELS LLPLAATFGE SLQHSFTHPN FNLKNAMATP  60
QTGTDIPMKQ LKSNGWNSYK LEDASYPQLP PTPSVLSFAN ANYANQMGIV KPKEEAVCSQ  120
SMNTLPSDIL ISQGSLGNQN YVFKAYQGGK RINTSTRLSQ TQDHIIAERK RREKLSQRFI  180
ALSAIVPGLK KMDKASVLGD AIKYLKQLQE RVKTLEEQTT KKNIESVVFV KKSQLFVDGD  240
NSNSGFSSEP LDEHLPEIEA RFCDKNVLIR IHCEKRKGVL EKSITEIEKL HLTVINSSVM  300
TFGSSALDIT IIAQMDEGFS MTVKDLVTNL RSAFELIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14163223869Transcription factor MYC2
5gnj_B2e-14163223869Transcription factor MYC2
5gnj_E2e-14163223869Transcription factor MYC2
5gnj_F2e-14163223869Transcription factor MYC2
5gnj_G2e-14163223869Transcription factor MYC2
5gnj_I2e-14163223869Transcription factor MYC2
5gnj_M2e-14163223869Transcription factor MYC2
5gnj_N2e-14163223869Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172ERKRRE
2168173RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844450.10.0PREDICTED: transcription factor bHLH25-like
SwissprotQ9T0723e-64BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2I4GKM40.0A0A2I4GKM4_JUGRE; transcription factor bHLH25-like
STRINGEMJ015501e-164(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-66bHLH family protein