PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00023800-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 262aa    MW: 30507.4 Da    PI: 9.939
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00023800-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.81.2e-182269148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT +Ed ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
  WALNUT_00023800-RA 22 KGPWTSDEDRLLIEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                        79********************************************97 PP
2Myb_DNA-binding51.81.8e-1675119147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
  WALNUT_00023800-RA  75 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                         7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.1651773IPR017930Myb domain
SuperFamilySSF466897.42E-3019116IPR009057Homeodomain-like
SMARTSM007175.4E-162171IPR001005SANT/Myb domain
PfamPF002494.0E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-232376IPR009057Homeodomain-like
CDDcd001671.55E-112469No hitNo description
PROSITE profilePS5129419.3574124IPR017930Myb domain
SMARTSM007171.4E-1474122IPR001005SANT/Myb domain
PfamPF002491.1E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2477123IPR009057Homeodomain-like
CDDcd001673.86E-1079120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MNFGVMAGHL GWGLIGEEGW RKGPWTSDED RLLIEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP HEESIILELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKVPSDA SEKAKTRLLR RQQFQQQQQQ QQLLQQQQQQ QQQLQLNQAD MKRILALLDE  180
NDHKATSVPQ ARQEMSTMYP NTTEEQSYFY SLLNSNVLVP EASNEDIIWD GLWMDDVHGN  240
FNTASATTRA SLQNLVTPFL NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-272212427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846808.10.0PREDICTED: transcription factor MYB24-like
TrEMBLA0A2I4GSD20.0A0A2I4GSD2_JUGRE; transcription factor MYB24-like
STRINGEOY062371e-133(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-83myb domain protein 305