PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00023834-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

HSF

Protein Properties

Length: 98aa MW: 11357.7 Da PI: 6.0797

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00023834-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	57.1	5.1e-18	21	83	2	65
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE- CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkv 65 F +kl ++++++e+++++sws+++nsfvv+++ efa k+Lpk+F h+n+aSF + n Y+F+++ WALNUT_00023834-RA 21 FFRKLCSMVDESETESMVSWSDDNNSFVVWNPYEFAAKLLPKHFNHKNLASFEHK-NPYEFTSI 83 899*************************************************876.99999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.1E-18	12	83	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	4.3E-7	17	96	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-7	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.01E-16	21	85	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	7.8E-15	21	83	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.0E-7	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MANVNDAESS TTTTTDTLSL FFRKLCSMVD ESETESMVSW SDDNNSFVVW NPYEFAAKLL 60 PKHFNHKNLA SFEHKNPYEF TSIVALIKYF QQMHAPKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018829016.1	1e-32	PREDICTED: heat stress transcription factor A-1b-like
Refseq	XP_018829017.1	1e-32	PREDICTED: heat stress transcription factor A-1b-like
TrEMBL	A0A2I4FBJ6	3e-31	A0A2I4FBJ6_JUGRE; heat stress transcription factor A-1b-like
STRING	Aquca_005_00532.1	9e-16	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	6e-16	heat shock transcription factor A1D