PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024006-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25858.5 Da    PI: 9.8185
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024006-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.57.4e-28959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        k ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs++ kl+ey s
  WALNUT_00024006-RA  9 KMIENRTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSTSRKLHEYTS 59
                        68***********************************************75 PP
2K-box75.81.2e-2571167197
               K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                         yqk+ g +l+++++e++ ++l+kLk+ ++ L re+Rh+lG+dL+ L+l eL+ Le+++ +s+  iR++K ++++ q+++  kk k+l+e++
  WALNUT_00024006-RA  71 YQKALGIDLWSSHYEKMLEDLKKLKDTNNRLGREIRHRLGQDLNGLNLLELHALEHKVSTSVDVIRARKLHVIKGQTDKYNKKIKNLEEIH 161
                         78899999*********************************************************************************** PP

               K-box  92 kaLrkk 97 
                         ++L+ +
  WALNUT_00024006-RA 162 RDLQLN 167
                         **9866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.931161IPR002100Transcription factor, MADS-box
SMARTSM004321.4E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-36295IPR002100Transcription factor, MADS-box
CDDcd002654.06E-37280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-27323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-231157IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.1E-1882167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.24584174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MGRGKIEIKM IENRTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFST SRKLHEYTSP  60
NTTTKEIYDQ YQKALGIDLW SSHYEKMLED LKKLKDTNNR LGREIRHRLG QDLNGLNLLE  120
LHALEHKVST SVDVIRARKL HVIKGQTDKY NKKIKNLEEI HRDLQLNLRA KYEESQYGLV  180
VDNEAADYES AVAIANGASN LFAFQLQNLN LHDAGGFGSQ DLRLA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-15161161MEF2 CHIMERA
6byy_B5e-15161161MEF2 CHIMERA
6byy_C5e-15161161MEF2 CHIMERA
6byy_D5e-15161161MEF2 CHIMERA
6bz1_A5e-15161161MEF2 CHIMERA
6bz1_B5e-15161161MEF2 CHIMERA
6bz1_C5e-15161161MEF2 CHIMERA
6bz1_D5e-15161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810897.11e-165PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-104TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLA0A2I4DUS61e-164A0A2I4DUS6_JUGRE; floral homeotic protein DEFICIENS-like
STRINGVIT_04s0023g02820.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]