PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024070-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family LBD
Protein Properties Length: 238aa    MW: 25869.1 Da    PI: 8.4077
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024070-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.83.9e-2934136198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C+vlr++C++ Cvl+ ++     p +q ++   ++k+FG+s +l++++a+pe++r+++++sl+yeA+ r+ +Pv Gavg+++++ ++
  WALNUT_00024070-RA  34 SCNGCRVLRKGCSETCVLRSCLqwiesPTAQGNAVLLLAKFFGRSDLLSFVSAVPESDRPALFQSLLYEACGRTVNPVDGAVGLLSRGMWH 124
                         6*************************999************************************************************** PP

              DUF260  87 leqlkaelallk 98 
                         ++ql++e+al++
  WALNUT_00024070-RA 125 VCQLAVETALAG 136
                         *******99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.5733139IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-2434134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MVALVLVVIL SLSSLALLLP HDKAIRGRKK EKMSCNGCRV LRKGCSETCV LRSCLQWIES  60
PTAQGNAVLL LAKFFGRSDL LSFVSAVPES DRPALFQSLL YEACGRTVNP VDGAVGLLSR  120
GMWHVCQLAV ETALAGGTLT PITDITSAGI FPDASGNDES SVQSLFRPSV PCMQENQPSN  180
PLTLSLQPRF SSEIGSTVPR FPFPWRVKRS MDMMISFKSE MTSLASSGND RKLLNLFD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018851816.11e-174PREDICTED: LOB domain-containing protein 38-like
SwissprotQ9SN235e-58LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A2I4H6P21e-172A0A2I4H6P2_JUGRE; LOB domain-containing protein 38-like
STRINGcassava4.1_016184m2e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.16e-60LOB domain-containing protein 38