PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024190-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 237aa    MW: 26432.2 Da    PI: 10.3429
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024190-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF657.9e-211964449
                        -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
              SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          k   qvtfskRr g++KKA+EL++LC++e+a+++fs+  k++ +
  WALNUT_00024190-RA 19 PKKNHLQVTFSKRRSGLFKKASELCTLCGVEIAILVFSPAEKVFSF 64
                        5667789***********************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.493868IPR002100Transcription factor, MADS-box
SMARTSM004324.3E-31867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.29E-26881IPR002100Transcription factor, MADS-box
CDDcd002651.34E-32978No hitNo description
PRINTSPR004042.0E-161030IPR002100Transcription factor, MADS-box
PfamPF003195.2E-231764IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MVKKKPSMGR QKIPIAKIPK KNHLQVTFSK RRSGLFKKAS ELCTLCGVEI AILVFSPAEK  60
VFSFGHPDVE SILDRYLTRN LPPAPDQSGA QQLVEAHRNA NVRDLNARLT QVLNQLEAEK  120
KLGESLHQMR KASQKQFWWE APINELGLHE LEQLKVSMEE LKKNVAKQTN KISSITGASS  180
THYSSPALFG VLNHDHTGTG SAGFFESKPT GFINNASTST MPNHRVYNFG YGHHGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A1e-16882175MEF2C
5f28_B1e-16882175MEF2C
5f28_C1e-16882175MEF2C
5f28_D1e-16882175MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018826894.11e-178PREDICTED: agamous-like MADS-box protein AGL62
RefseqXP_018860591.11e-178PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A2I4F5H91e-176A0A2I4F5H9_JUGRE; agamous-like MADS-box protein AGL62
STRINGXP_004511261.11e-90(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-60AGAMOUS-like 62