PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024234-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 287aa    MW: 33169.3 Da    PI: 6.9726
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024234-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.91.1e-35261172102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y++++d ++++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkk+  ++         weF++++F+kg k+
  WALNUT_00024234-RA  26 FLIKTYQLVDDTRTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKIAADR---------WEFANEYFRKGAKH 107
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+r+k+
  WALNUT_00024234-RA 108 LLSEIHRRKN 117
                         ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.109.2E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.3E-5622115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.06E-3323115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.9E-182649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-187789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAFTMDQSSE EMVFSVESQK SVPAPFLIKT YQLVDDTRTD HIVSWGEDET TFVVWRPPEF  60
ARDLLPNYFK HNNFSSFVRQ LNTYGFKKIA ADRWEFANEY FRKGAKHLLS EIHRRKNPQL  120
HHQHYYHDHQ ARQFFQPSGD QIGNWFEPDP LPSPKPNTDI LTALTEDNQR LRKKNFMLLS  180
ELAHMKNLYN DIIYFIQNHV KPVPYDQKSS DSSVPMLIDL DSSCQVQSFV GVQGSKNGSM  240
GKSLVTNSIE ETDHSTAAVK LFGVPLSGKK RLYSEKADRQ SEVEFGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A4e-20211153106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A4e-20211153106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018855724.10.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ9C6352e-83HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2I4HHS90.0A0A2I4HHS9_JUGRE; heat stress transcription factor B-4b-like
STRINGPOPTR_0001s28040.11e-134(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-83heat shock transcription factor B4