PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024331-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family FAR1
Protein Properties Length: 234aa    MW: 25916.9 Da    PI: 6.9233
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024331-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.62.6e-1046108268
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkv 68 
                         +Y++Y+k++GF v+k++s++  ++g++ +  + C   g+++++  +     ++r+++++gC a+++ 
  WALNUT_00024331-RA  46 YYKKYGKQMGFGVCKRNSRQD-DDGNVSWICLACVHGGTSKSKAAN---IMKPRQTEKIGCMARINA 108
                         9**************998887.8999*************9999888...9999**********9974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.0E-746108IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDANTDCTST HECDEVVEDT NIECDETIEQ PMVGMNFSYV EEVWSYYKKY GKQMGFGVCK  60
RNSRQDDDGN VSWICLACVH GGTSKSKAAN IMKPRQTEKI GCMARINAIE QLKVQYPGIA  120
DPVTSTGGTT VDRDTSIRGT TVDPITSMGG TTGKVLSPLV VRSKRRPSSK RKVHPAEKSL  180
KKSSTRRQLH HDEAERSSQA PDECTVSNTH HEAPQTQAQL RGLHISEEDN DARN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836653.15e-74PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2I4FYC81e-72A0A2I4FYC8_JUGRE; protein FAR1-RELATED SEQUENCE 5-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13793717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.33e-07FAR1-related sequence 2