PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024380-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TCP
Protein Properties Length: 462aa    MW: 51036.4 Da    PI: 7.0727
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024380-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP67.83.6e-213596465
                 TCP  4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65
                        +++ + ++hTkv+gR RRvR++++c   +F L++eLG+ +d++ti+WLl q  p     +++
  WALNUT_00024380-RA 35 RRRLTGDRHTKVEGRHRRVRIPITCCPGIFRLTEELGHRSDGQTIQWLLSQVRPDLVLSPNS 96
                        677899**********************************************9988776666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136916.9823993IPR017887Transcription factor TCP subgroup
PfamPF036343.2E-164089IPR005333Transcription factor, TCP
Gene3DG3DSA:3.60.110.103.0E-68141424IPR003010Carbon-nitrogen hydrolase
SuperFamilySSF563178.37E-66141431IPR003010Carbon-nitrogen hydrolase
PROSITE profilePS5026340.218142449IPR003010Carbon-nitrogen hydrolase
CDDcd075649.68E-121142429No hitNo description
PfamPF007957.1E-58143421IPR003010Carbon-nitrogen hydrolase
PROSITE patternPS009200174189IPR000132Nitrilase/cyanide hydratase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0019499Biological Processcyanide metabolic process
GO:0051410Biological Processdetoxification of nitrogen compound
GO:0018822Molecular Functionnitrile hydratase activity
GO:0047427Molecular Functioncyanoalanine nitrilase activity
GO:0047558Molecular Function3-cyanoalanine hydratase activity
GO:0080061Molecular Functionindole-3-acetonitrile nitrilase activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEVQPQSSAE NVVGELPLKI IQQQQLSPEE QLLKRRRLTG DRHTKVEGRH RRVRIPITCC  60
PGIFRLTEEL GHRSDGQTIQ WLLSQVRPDL VLSPNSSLSR PGHHSASADS VPGRFDLPIC  120
TSRIDEDDLD QKAVALLQRL TVRATVVQAS TVFYNTIATL DKAERLIAGA AAYGSQLVVF  180
PEAFVGGYPH GMMFEASTET HLTLENKEFQ KYFASAIDVP GPEVDRLAKI SGKYKVHLVM  240
GVVERVGYSL FSAILFFDSL GRYLGKHRKL MPMASERAVW RPGEKSLLPV YETSIGKIGG  300
LICWDNRMPS LRTELYDKGI EIYCAPTAEA REIWRASMTH IALEGGCFVL SANQFCRRKD  360
YFLSTECVSE GSNGDISQDK IVCAGGSVII SPSGTILAGP NYQGESLISA DLDLGEIVQA  420
KLDFGGIGHL VGPNSVKWTP DKNNSNLLRT PVKTEVPDLQ QW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3wuy_A6e-3814143915307Nitrilase
3wuy_B6e-3814143915307Nitrilase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13337KRRRL
Functional Description ? help Back to Top
Source Description
UniProtHighly specific for beta-cyano-L-alanine (Ala(CN)). Low activity with 3-phenylpropionitrile (PPN). Not associated with auxin production but may be involved in cyanide detoxification. {ECO:0000269|PubMed:10574458, ECO:0000269|PubMed:11060302}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by abscisic acid or by 1-aminocyclopropane-1-carboxylic acid (ACC). {ECO:0000269|PubMed:10574458}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820046.10.0PREDICTED: bifunctional nitrilase/nitrile hydratase NIT4B-like
SwissprotQ429661e-146NRL4B_TOBAC; Bifunctional nitrilase/nitrile hydratase NIT4B
TrEMBLA0A2I4EKX20.0A0A2I4EKX2_JUGRE; bifunctional nitrilase/nitrile hydratase NIT4B-like
STRINGXP_008243489.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF458388
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.13e-19TCP family protein
Publications ? help Back to Top
  1. Dohmoto M,Sano J,Tsunoda H,Yamaguchi K
    Structural analysis of the TNIT4 genes encoding nitrilase-like protein from tobacco.
    DNA Res., 1999. 6(5): p. 313-7
    [PMID:10574458]
  2. Piotrowski M,Schönfelder S,Weiler EW
    The Arabidopsis thaliana isogene NIT4 and its orthologs in tobacco encode beta-cyano-L-alanine hydratase/nitrilase.
    J. Biol. Chem., 2001. 276(4): p. 2616-21
    [PMID:11060302]