PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024392-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 431aa    MW: 47291.7 Da    PI: 5.7544
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024392-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.14e-111694283374
                GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                          lLl+cAe+v  ++l  a+ lL ++ +l+sp+g++ qR+aayf  AL+ar+  s  ++y+ l++++ +  +s + ++al+ ++ +sP +kf
  WALNUT_00024392-RA  69 GLLLQCAECVGMDKLDDASDLLPEIADLSSPYGSSPQRVAAYFSHALQARVITSYLGTYSPLTSNDLNLIQSRRIFSALQSYNSISPSVKF 159
                         58*****************************************************************9999******************** PP

                GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                         sh+taNqaI +a++ge+rvHiiD+di+qGlQWp L++ LasR+++  s+R+Tg+gs    s+e l +tg+rL +fA++lg+pfef++lv k
  WALNUT_00024392-RA 160 SHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRNKKIRSMRVTGFGS----SSELLDSTGKRLGDFATSLGLPFEFHPLVGK 246
                         ********************************************************....99*************************9888 PP

                GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                           +  ++++L v+p Ea++V++++  h l+d ++s       +L+l+  l+Pk++++veq+++h ++ Fl+rf+eal+yysalfd+l  +l
  WALNUT_00024392-RA 247 IGNLKDVSRLGVRPSEAIVVHWMH--HCLYDITGSDLG----TLRLLTLLRPKLITIVEQDLSH-GGGFLARFVEALHYYSALFDALGDGL 330
                         7777799***************99..777777777777....9*********************.678*********************** PP

                GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                         + +s er++vE++l+g ei+n++a  g +r+ + + + +W e l+++GF+pv+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +
  WALNUT_00024392-RA 331 GGDSVERHMVEQQLFGCEIRNILAVGGPKRTGEDK-VDRWGEELSRVGFRPVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLS 420
                         *****************************887765.9****************************************************** PP

                GRAS 367 LvsvSaWr 374
                         L+++SaW+
  WALNUT_00024392-RA 421 LLVASAWQ 428
                         *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.31341408IPR005202Transcription factor GRAS
PfamPF035141.4E-10869428IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MLQSLVPQSP MSNPTTSSPM NTKRVYGDDF SLDEATTKRI TFSHDASLSV DDRTDQLDDS  60
ESTGLRLLGL LLQCAECVGM DKLDDASDLL PEIADLSSPY GSSPQRVAAY FSHALQARVI  120
TSYLGTYSPL TSNDLNLIQS RRIFSALQSY NSISPSVKFS HFTANQAIFQ ALDGEDRVHI  180
IDLDIMQGLQ WPGLFHILAS RNKKIRSMRV TGFGSSSELL DSTGKRLGDF ATSLGLPFEF  240
HPLVGKIGNL KDVSRLGVRP SEAIVVHWMH HCLYDITGSD LGTLRLLTLL RPKLITIVEQ  300
DLSHGGGFLA RFVEALHYYS ALFDALGDGL GGDSVERHMV EQQLFGCEIR NILAVGGPKR  360
TGEDKVDRWG EELSRVGFRP VSLGGNPAAQ ASLLLGMFPW KGYTLVEENG CLKLGWKDLS  420
LLVASAWQPS D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1607342925380Protein SCARECROW
5b3h_A1e-1607342924379Protein SCARECROW
5b3h_D1e-1607342924379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018813375.10.0PREDICTED: scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2I4E1V80.0A0A2I4E1V8_JUGRE; scarecrow-like protein 23
STRINGEOX931730.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-166GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]