PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024408-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 226aa    MW: 25728 Da    PI: 4.3378
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024408-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS37.53.5e-12159219313373
                GRAS 313 ekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         + W + ++   GFkp+p+s  + +qak+l++ ++  gy v++e+  l l+Wk+rpL+++S W
  WALNUT_00024408-RA 159 MLWGNGFGYlKGFKPIPISFCNISQAKYLVSLFS-GGYWVKHENCRLALCWKSRPLTTASIW 219
                         55666666547***********************.89************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035141.2E-9159219IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MIPSYYDGLH DGSLETSYSL QTGDPFSPNT MQGGIFACSD MERLFQTERE LVNIDSIYQD  60
TSEHDLKDEE EQVGVLTDGN SPLKVIQEDE LMEDSSLTDL LLMGAEAVED QNWLLASTII  120
AKLNNLLLDR ENGDNSFHKL AMFFTQDSLR QFPYEEERML WGNGFGYLKG FKPIPISFCN  180
ISQAKYLVSL FSGGYWVKHE NCRLALCWKS RPLTTASIWV PKSKPR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018814922.13e-89PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2I4E6918e-88A0A2I4E691_JUGRE; nodulation-signaling pathway 2 protein-like
STRINGVIT_04s0044g00620.t011e-35(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-08GRAS family protein