PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024430-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 323aa    MW: 35996.8 Da    PI: 5.3366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024430-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-192675255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a ++k++g
  WALNUT_00024430-RA 26 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARKIRG 75
                        69*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-222685IPR016177DNA-binding domain
CDDcd000181.48E-332684No hitNo description
Gene3DG3DSA:3.30.730.101.1E-322685IPR001471AP2/ERF domain
PROSITE profilePS5103224.1312683IPR001471AP2/ERF domain
SMARTSM003802.9E-362689IPR001471AP2/ERF domain
PRINTSPR003678.6E-122738IPR001471AP2/ERF domain
PfamPF008475.7E-122775IPR001471AP2/ERF domain
PRINTSPR003678.6E-124965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MRSKAIKSVE LNGQAEKSAK RKRKNQYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE  60
EAARAYDAEA RKIRGKKAKV NFPDEATRAS SKHSVKENLR KPLPKANLHS VQPNLNQNFD  120
SMNYADQDYT MGLMEEKPFT NQYGYLDSIP LNGDVEPKSF VSSGGTTPTS TYFNSDQGSN  180
TFDYSDFAWG EQGPKTPEIS SVLSVSAEGG ESQFLEDASQ FLEDASPRKK LKFDSENVAS  240
VESNTAKTVS VELSAFESQI NYQVPYLEGI WDDSIETLFS GDTTQDVGNP MDLWGFEDDS  300
VMVKLQRKSA SLPLPPGSKT EGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-2125911380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018809884.10.0PREDICTED: ethylene-responsive transcription factor RAP2-12-like, partial
TrEMBLA0A2I4DRV70.0A0A2I4DRV7_JUGRE; ethylene-responsive transcription factor RAP2-12-like
STRINGVIT_09s0002g00470.t011e-130(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48083252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.21e-56related to AP2 12