PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024879-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 571aa    MW: 63768 Da    PI: 4.7143
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024879-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.49.7e-1372025712374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         ++ L++cA a+++g++ +a+ ++++l++++s +gdp qR+aay++e+Laar+a s++ lykal+++e +   ss++laa+++++ev+P++k
  WALNUT_00024879-RA 202 RQMLIDCAGALADGNTMEASVMINELRQMVSVQGDPPQRIAAYMVEGLAARMAASGKCLYKALKCKEPP---SSDRLAAMQILFEVCPCFK 289
                         689*****************************************************************9...9****************** PP

                GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvl 181
                         f++++aN a+ ea++ e+rvHiiDfdi+qG Q+++L+q++a+R+++pp+lR+Tgv++pes+  s   l+ +g+rL+++Ae+lgvpfef++ 
  WALNUT_00024879-RA 290 FGFMAANGAMIEAFKDEKRVHIIDFDINQGSQYMTLIQTIANRAGNPPQLRLTGVDDPESVqrSVGGLKIIGQRLENLAEALGVPFEFQA- 379
                         ***********************************************************9989999************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsle 272
                         +a++++ +++++L+++pgEal Vn+++qlh+++desvs+ +erd++L+lvksl+Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+
  WALNUT_00024879-RA 380 LASKTSIVTPSMLDCRPGEALMVNFSFQLHHMPDESVSTVNERDQLLRLVKSLNPKLVTVVEQDVNTNTAPFFPRFIEAYNYYSAVFDSLD 470
                         599**************************************************************************************** PP

                GRAS 273 aklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                         a+lpr+s++ri+vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p++ +  ++++  +r++ ++ y+v+ee g+l +gW 
  WALNUT_00024879-RA 471 ATLPRDSQDRINVERQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTSCPMGPNLIDTIQKQIRQYCDR-YKVKEEMGALHFGWA 560
                         *************************************************************************66.*************** PP

                GRAS 364 drpLvsvSaWr 374
                         d++L+++SaWr
  WALNUT_00024879-RA 561 DKSLIVASAWR 571
                         **********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.391175552IPR005202Transcription factor GRAS
PfamPF035143.3E-134202571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSLVRSAELS STSYKNPKLY SLKGSDDSPG LSAQIFGSDK HKVTHMTDSY CSESYEKYFL  60
DSPTEELIQP SSSGISGNSF ESRGPSSSTQ NPFGTPLVSM RHLDAYRSNF ELDYLERSLD  120
AIDYDEDNMR LKLQELERAL FNDDDDDMFG TGHSMEVDVE WADPVQNTLL HDSPKESSST  180
DSNLSSISSN KEVSQLSPRT PRQMLIDCAG ALADGNTMEA SVMINELRQM VSVQGDPPQR  240
IAAYMVEGLA ARMAASGKCL YKALKCKEPP SSDRLAAMQI LFEVCPCFKF GFMAANGAMI  300
EAFKDEKRVH IIDFDINQGS QYMTLIQTIA NRAGNPPQLR LTGVDDPESV QRSVGGLKII  360
GQRLENLAEA LGVPFEFQAL ASKTSIVTPS MLDCRPGEAL MVNFSFQLHH MPDESVSTVN  420
ERDQLLRLVK SLNPKLVTVV EQDVNTNTAP FFPRFIEAYN YYSAVFDSLD ATLPRDSQDR  480
INVERQCLAR DIVNIVACEG EERIERYEVA GKWRARMMMA GFTSCPMGPN LIDTIQKQIR  540
QYCDRYKVKE EMGALHFGWA DKSLIVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-6620857026378Protein SCARECROW
5b3h_A9e-6620857025377Protein SCARECROW
5b3h_D9e-6620857025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKX0290810.0KX029081.1 Castanea sativa Scarecrow-like 3 (SCL3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812342.10.0PREDICTED: scarecrow-like protein 1
RefseqXP_018812343.10.0PREDICTED: scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2I4DYW20.0A0A2I4DYW2_JUGRE; scarecrow-like protein 1
STRINGXP_010104285.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49883457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]