PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025004-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARF
Protein Properties Length: 596aa    MW: 65443.5 Da    PI: 6.3795
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025004-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.11.9e-24124225199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f k+ltpsd+++ g +++p+ +a+++        +++ +   l+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+ 
  WALNUT_00025004-RA 124 FSKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--NLSVTDVHGVVWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFM- 211
                         88*********************999****986555555..6************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++s+++++++v+r+
  WALNUT_00025004-RA 212 -RNSRGQMFIGVRRA 225
                         .5699999****996 PP
2Auxin_resp97.81.6e-32276359183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                         aa+ a+++++FevvY+P+a++s+Fvvk+e ve+al++ +++GmR+kma+etedss+ ++ +Gtv++ s  d+  W++S+Wr+L+
  WALNUT_00025004-RA 276 AAELAAQEMPFEVVYYPKAGWSDFVVKAEVVEEALNMFWTAGMRVKMAMETEDSSRMTWfQGTVSSASVPDSGPWRGSPWRMLQ 359
                         68899*****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-29120230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-34122229IPR015300DNA-binding pseudobarrel domain
CDDcd100177.42E-21123224No hitNo description
PfamPF023625.3E-22124225IPR003340B3 DNA binding domain
SMARTSM010194.7E-20124226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.393124226IPR003340B3 DNA binding domain
PfamPF065071.2E-29276359IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MPPRDPSPAN NLRRLDPKIW RACAGNSVQI PTVHSRVYYF PQGHVEQSSS RPPFLSPLVL  60
SKPLIPCQIS AVEFLADPIT DEVFAKLLLQ PVNAQLSSSF LDSSRFNQPD RNEGAGEPDK  120
LVSFSKILTP SDANNGGGFS VPRFCADSIF PPLNYQAEPP VQNLSVTDVH GVVWDFRHIY  180
RGTPRRHLLT TGWSKFVNHK KLVAGDSVVF MRNSRGQMFI GVRRAVRSSN ADCGGRWSLQ  240
IAEATKGTPD DDNASGREGF SRSGRVRLSA EAVAEAAELA AQEMPFEVVY YPKAGWSDFV  300
VKAEVVEEAL NMFWTAGMRV KMAMETEDSS RMTWFQGTVS SASVPDSGPW RGSPWRMLQV  360
TWDEPGVLQN AKGVSPWQVE HVSPVSPLHT TFPPAKKCRA LQNSGLLTDG EGDLFFPITG  420
FTNSTMGHMS QSMLNYNSFP AGMQGARQNL FTKSTLSNVL SENNMLVDNS YGNNMVSKLS  480
TVSTELNIGS SQSENLSPHS QSSVHSFGTE LIGTQCCSST KVGASCFQLF GKIIHIKQPV  540
ESGFDDVNST EDDSIKAYNE NEGINNPQDL SSTYTKLLDR LDVQCNRASV FEACTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-701538051388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812230.10.0PREDICTED: auxin response factor 17-like
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A2I4DYK70.0A0A2I4DYK7_JUGRE; Auxin response factor
STRINGcassava4.1_004122m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]