PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025131-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family NF-YB
Protein Properties Length: 185aa    MW: 20788.3 Da    PI: 5.8641
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025131-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB44.34.2e-1448141795
               NF-YB   7 flPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 
                         +lP a v r++k  l +     +  + k++     e +  fi ++++ a+d c++ kr+tin+dd+l al ++ f ++++plk+ l ++r+
  WALNUT_00025131-RA  48 ELPRAIVRRVVKDKLSQcspdcDMSVHKESLLAFSESARIFIHYLSATANDICRESKRQTINADDVLKALEEIEFPEFLKPLKASLDEFRQ 138
                         68999999999998865222124567788888899*******************************************************8 PP

               NF-YB  93 leg 95 
                          ++
  WALNUT_00025131-RA 139 KNA 141
                         765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.0E-3444178IPR009072Histone-fold
PfamPF008085.5E-948117IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.38E-2649173IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MNSTSSRTRK AETMAGNKTL ETHEDERVSA TTDSRKKEMD KVIPEAGELP RAIVRRVVKD  60
KLSQCSPDCD MSVHKESLLA FSESARIFIH YLSATANDIC RESKRQTINA DDVLKALEEI  120
EFPEFLKPLK ASLDEFRQKN AGKKAKVAKE KEVKKRKMEE KAPQKSGGGE RDEEEEGDQD  180
GTGDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A1e-134915718121DNA polymerase epsilon subunit D
5y27_A1e-134915718121DNA polymerase epsilon subunit D
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150156KEVKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811029.11e-133PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A2I4DV531e-131A0A2I4DV53_JUGRE; DNA polymerase epsilon subunit 3
STRINGXP_010031521.12e-61(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.15e-46nuclear factor Y, subunit B11