PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025139-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C3H
Protein Properties Length: 291aa    MW: 30617.9 Da    PI: 9.6842
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025139-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063457225
                        -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                        k ++C  f+ t  C++G++C+F H
  WALNUT_00025139-RA 34 KSKPCTKFFSTAGCPFGESCHFLH 57
                        7789******************** PP
2zf-CCCH25.52.4e-0898122226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         kt+ C+ +     Ck+Gd+C+FaH 
  WALNUT_00025139-RA  98 KTRMCNKYNTAEGCKFGDKCHFAHN 122
                         89**********************7 PP
3zf-CCCH34.43.8e-11258282126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         ykt+lC +f + G C +G+rC+FaHg
  WALNUT_00025139-RA 258 YKTKLCENFTK-GSCTFGERCHFAHG 282
                         9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.7093260IPR000571Zinc finger, CCCH-type
SMARTSM003560.913259IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-63358IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43457IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-83457IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-895127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-1395127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8496124IPR000571Zinc finger, CCCH-type
SMARTSM003560.05796123IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-498122IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.34E-16155236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.1E-17164233IPR004088K Homology domain, type 1
SMARTSM003222.2E-13164234IPR004087K Homology domain
PROSITE profilePS5008414.99165229IPR004088K Homology domain, type 1
CDDcd001053.10E-16167229No hitNo description
PfamPF000131.3E-12167230IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.7E-17253288IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-8256287IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-7257283IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.577257284IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-8258282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MDIRKRGRPE AGLNANGGAK KFKQEMDSTG VGSKSKPCTK FFSTAGCPFG ESCHFLHYVP  60
GGYNAVAQMM NLAPAVPAAS RNMAGPPTIQ NGSTPAVKTR MCNKYNTAEG CKFGDKCHFA  120
HNDWELGKPI APSHEDPRAM GPIPGRMGSR MELAPPGPAA SFGASATAKI SVDASLAGAI  180
IGKGGVNSKQ ICRQTGAKLS IRDHESDPNL RNIELEGTFE QIKEASAMVR QLIVTVSVSG  240
PPKTHGMPGA AAPPGSNYKT KLCENFTKGS CTFGERCHFA HGAAELRKSG V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805967.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-115C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2I4DFQ70.0A0A2I4DFQ7_JUGRE; zinc finger CCCH domain-containing protein 14-like
STRINGVIT_08s0007g06400.t011e-168(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.14e-61C3H family protein