PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025172-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 311aa    MW: 33954.4 Da    PI: 6.5808
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025172-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014115137123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C+++F++   L  H  +H
  WALNUT_00025172-RA 115 YECKTCKRTFPSFQALGGHRASH 137
                         99**********99999998887 PP
2zf-C2H212.60.00043198220123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C+ Cg  F++   L  H+r+H
  WALNUT_00025172-RA 198 HECSVCGAEFTSGQALGGHMRRH 220
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139125.1E-13114139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-8114137No hitNo description
PROSITE profilePS5015710.325115142IPR007087Zinc finger, C2H2
SMARTSM003550.11115137IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280117137IPR007087Zinc finger, C2H2
SuperFamilySSF576671.54E-8193220No hitNo description
Gene3DG3DSA:3.30.160.609.0E-4196220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.1E-13197222IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138198225IPR007087Zinc finger, C2H2
SMARTSM003550.012198220IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280200220IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MISTTANSPT GEGGGAGTGG GIYGEKNCNI DTINDDMNTS FSPATSTELL QDSTTEEEED  60
MANCLILLAQ GQTRPETPRQ VEVDHGGGGG AFKFNSRRFL EAAATGTGKA GYYVYECKTC  120
KRTFPSFQAL GGHRASHKKP KAMAAAEERE RSSKQFLLSS DDDQEAQSKK NDLISSLSLQ  180
LSSSSRGLGS NNNRSKVHEC SVCGAEFTSG QALGGHMRRH RAPNMGTNTT LSFTSPSLAL  240
EPDHHHDQET KRPRQMLSLD LDLNLPAPED DHREPKFSFA TKQQQQKQQQ QPQQQQQPLV  300
FSARTLVDCH Y
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018837647.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A2I4G1710.0A0A2I4G171_JUGRE; zinc finger protein ZAT5-like
STRINGEOY188512e-97(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.18e-61C2H2 family protein