PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025256-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family Trihelix
Protein Properties Length: 767aa    MW: 83120.5 Da    PI: 5.0961
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025256-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.97.5e-30102186187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+laL+++r+em+  +r+++lk+plWe++s+k+ e g++rs+k+Ckek+en+ k+yk++ke++ +r++++s  +++f++lea
  WALNUT_00025256-RA 102 RWPRQETLALLKIRSEMDAVFRDASLKGPLWEDISRKLGEMGYKRSAKKCKEKFENVDKYYKRTKESRAGRQDGKS--YKFFSELEA 186
                         8*********************************************************************866665..******985 PP
2trihelix106.81.5e-33496581187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW+k evlaLi++r+ +e+r++++  k+plW+e+s+ m++ g++rs+k+Ckekwen+nk+ykk+ke++k+r +e+ +tcpyf++l+a
  WALNUT_00025256-RA 496 RWPKAEVLALIKLRSGLESRYQEAGPKGPLWDEISAGMQRMGYKRSAKRCKEKWENINKYYKKVKESNKER-PEDAKTCPYFHELDA 581
                         8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00799161IPR001005SANT/Myb domain
CDDcd122039.24E-29101166No hitNo description
PROSITE profilePS500906.783101159IPR017877Myb-like domain
PfamPF138371.7E-20101187No hitNo description
SMARTSM007170.0077493555IPR001005SANT/Myb domain
PROSITE profilePS500906.795495553IPR017877Myb-like domain
PfamPF138374.4E-24495582No hitNo description
CDDcd122033.42E-32495560No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 767 aa     Download sequence    Send to blast
MQQGGDGGGG SKSQYGGSSE MGTTPVALDA TSAATTTGGH QMGMDNDQAQ LQVEAASPIS  60
CRPPASAAVN LDELMALQGG GADEDALAAG AGDGGGVGGG NRWPRQETLA LLKIRSEMDA  120
VFRDASLKGP LWEDISRKLG EMGYKRSAKK CKEKFENVDK YYKRTKESRA GRQDGKSYKF  180
FSELEALHGS FSGSSAAGNS GSVTLVVPPA TTTFTTIHPM AAPVSTGIGI GGIFSNPMPI  240
TSIRVNPQVP PGFGMFPPNP SSAAVAPAPV SGSIGAAAPP IGVSFSSNSL SSSPGSHEDD  300
DDEEESLEAE PLNLGSSRKR KRRESSKAGG SSDTRRMMAF FQNLMKQVMH KQEAMQQRFL  360
EVMEKREQDR MIREEAWNRQ EMARLAREHE LMAQDRATSA SRDAAIVGFL QKITGHSIQL  420
PTHLSNTPAA PPPALVPSPM PAPPPQPPSS QQKPQQQQVL RHSHRHTQVV MAIPEQQVPP  480
QDISGGGGSF EPISSRWPKA EVLALIKLRS GLESRYQEAG PKGPLWDEIS AGMQRMGYKR  540
SAKRCKEKWE NINKYYKKVK ESNKERPEDA KTCPYFHELD ALYRKKIQGG SSSTGGSGNN  600
VSFLYQINRP QQQENIELDP SDAPETIPPP QPRPPHGLAS TDSENKNGAS TDVRSQTSNM  660
GLPEGIFGEG IEGAPKKPED IVKELIIMEQ QEHQGQQQLI VDDYDKTEED DTDNNIDQEE  720
EEDEDEEEDK ELEEDMKMGY KIEFQRQNAV APNGGGNGAP SFLAVVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144152KRSAKKCKE
2317322RKRKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018809369.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
TrEMBLA0A2I4DQE90.0A0A2I4DQE9_JUGRE; trihelix transcription factor GTL1-like isoform X1
STRINGcassava4.1_002081m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-46Trihelix family protein