PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025365-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 262aa    MW: 30633.8 Da    PI: 4.6469
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025365-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.63.8e-1758111356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         kR++++ +q++eLe+ Fe ++ +  +++  LA++lgL+ rqV +WFqNrR++ k
  WALNUT_00025365-RA  58 KRRRLSLYQVKELERSFEVENRLEPDRKVNLAEELGLQPRQVAIWFQNRRTRLK 111
                         8999************************************************98 PP
2HD-ZIP_I/II113.21.7e-3657149193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         ek+rrls  qvk LE+sFe e++Lep+rKv+la+eLglqprqva+WFqnrR R ktkql +d++ Lk++ydalk + ++Le+e+e+L+++l
  WALNUT_00025365-RA  57 EKRRRLSLYQVKELERSFEVENRLEPDRKVNLAEELGLQPRQVAIWFQNRRTRLKTKQLQRDFSLLKDSYDALKLDCNNLEQEKEALTSTL 147
                         699*************************************************************************************999 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  WALNUT_00025365-RA 148 RE 149
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-1848114IPR009057Homeodomain-like
PROSITE profilePS5007117.11953113IPR001356Homeobox domain
SMARTSM003891.6E-1456117IPR001356Homeobox domain
PfamPF000462.5E-1458111IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-1758119IPR009057Homeodomain-like
CDDcd000861.08E-1458114No hitNo description
PRINTSPR000312.0E-58493IPR000047Helix-turn-helix motif
PROSITE patternPS00027088111IPR017970Homeobox, conserved site
PRINTSPR000312.0E-593109IPR000047Helix-turn-helix motif
PfamPF021837.4E-11113154IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEQFSGSDSL DALISICPPK EKKDEQINTH GYSEEFRAML DRINGEDLSY ETSQVLEKRR  60
RLSLYQVKEL ERSFEVENRL EPDRKVNLAE ELGLQPRQVA IWFQNRRTRL KTKQLQRDFS  120
LLKDSYDALK LDCNNLEQEK EALTSTLREL KEKLYRQSSE GNHSVEEESL ISEFDNNVSD  180
RRQTGDLFEN GEKAVRVYSD SKDGSSDCVS NSLADRFRDS ESREVPGKAY QPQPTRMEEQ  240
STYCNFFSVD QAPTLHWYFP EQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15761KRRRL
2105113RRTRLKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857440.10.0PREDICTED: homeobox-leucine zipper protein ATHB-6-like
TrEMBLA0A2I4HMQ50.0A0A2I4HMQ5_JUGRE; homeobox-leucine zipper protein ATHB-6-like
STRINGPOPTR_0002s10080.12e-80(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.16e-41homeobox protein 6