PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00025484-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

ERF

Protein Properties

Length: 253aa MW: 28607.6 Da PI: 5.2333

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00025484-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	62.2	1.1e-19	124	172	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ r r++lg+f taeeAa+a+++a+ ++g WALNUT_00025484-RA 124 YRGVRQRP-WGKWAAEIRDPK----RaIRVWLGTFNTAEEAARAYDKAAIDFRG 172 9*****.******83....57********************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	1.1E-37	123	186	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.908	123	180	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-32	123	181	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-23	123	182	IPR016177	DNA-binding domain
CDD	cd00018	3.07E-34	124	180	No hit	No description
Pfam	PF00847	7.2E-13	124	172	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.9E-12	124	135	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.9E-12	146	162	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MQGKSFNAPT LDEASSSNQH PYRLTTEQEF SIMVVALTNV VSGTSAVTSA NPDYSTNSLL 60 FHTPSFTNLD TCHVCNIDGC LGCNFFFPPM DKFQEEEEEE VEDNKKKKGK LPAEATKRRA 120 KKYYRGVRQR PWGKWAAEIR DPKRAIRVWL GTFNTAEEAA RAYDKAAIDF RGPRAKLNFP 180 FSEYTTHRDQ VSESCVTSSE QHHSNSYSSA GIENRSKENE LCEPISEDEF QRWMMMDFSE 240 NSSDSAATGT ECS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-24	122	181	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018809970.1	0.0	PREDICTED: ethylene-responsive transcription factor ERF109-like
Swissprot	Q9SZ06	2e-43	EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBL	A0A2I4DS42	0.0	A0A2I4DS42_JUGRE; ethylene-responsive transcription factor ERF109-like
STRING	XP_006487104.1	3e-64	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2962	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34410.1	4e-40	redox responsive transcription factor 1

Publications ? help Back to Top
Matsuo M,Oelmüller R REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling. Plant Signal Behav, 2015. 10(11): p. e1051279 [PMID:26479402] Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression. J Vis Exp, 2018. [PMID:26649488] Bahieldin A, et al. Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant. BMC Plant Biol., 2016. 16(1): p. 216 [PMID:27716054] Huang D,Lin W,Deng B,Ren Y,Miao Y Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis. Int J Mol Sci, 2018. [PMID:29112140] Kong X, et al. PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis. Cell Rep, 2018. 22(5): p. 1350-1363 [PMID:29386120]