PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025554-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 1024aa    MW: 112718 Da    PI: 6.2469
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025554-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding66.35.6e-2161107148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         +g+W++eEde++v++v+++G++ W+tIa++++ gR +kqc++rw+++l
  WALNUT_00025554-RA  61 KGPWSKEEDEIIVKLVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 107
                         79******************************.*************97 PP
2Myb_DNA-binding476.1e-15113155145
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         + +WT+eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
  WALNUT_00025554-RA 113 KEAWTQEEELALIRAHQIYGNK-WAELTKFLP-GRSDNAIKNHWN 155
                         579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.984155IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.7E-113667IPR009057Homeodomain-like
PROSITE profilePS5129433.3156111IPR017930Myb domain
SuperFamilySSF466891.83E-3158154IPR009057Homeodomain-like
SMARTSM007171.2E-1960109IPR001005SANT/Myb domain
PfamPF002495.2E-1961107IPR001005SANT/Myb domain
CDDcd001673.08E-1763107No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2768115IPR009057Homeodomain-like
PROSITE profilePS5129418.978112162IPR017930Myb domain
SMARTSM007171.1E-14112160IPR001005SANT/Myb domain
PfamPF002493.4E-13113156IPR001005SANT/Myb domain
CDDcd001672.14E-11115155No hitNo description
Gene3DG3DSA:1.10.10.601.4E-20116162IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MQVYLFVKKL WKVTRQSILL KMGLVMVVRK CDLYTAECFK ERTDVQCLHR WQKVLNPELV  60
KGPWSKEEDE IIVKLVNKYG PKKWSTIAQH LPGRIGKQCR ERWHNHLNPA INKEAWTQEE  120
ELALIRAHQI YGNKWAELTK FLPGRSDNAI KNHWNSSVKK KLDSYLASGL LAQFPALPHI  180
GHQNQHMHSS SSRMQGSGDD SGPKGIETQE TSECSQESTV AGCYKSSSDM TNAVLHASEE  240
FPLTRESGSA KEQSSSPPSC SEQYYTSLED VDFSMPNITC EADCSDKFLE QNFSHDAGTS  300
AGGDHQFNIH AIPNISSLEV EQESSQLKTH CIGTNESHET MDVPCQTSAE LRASTSTGCI  360
TMGSYKLENM RIPDDECCRI LFSEALNDGF FSGSHTKVSN IVPLGECTDS FCCQSSNCII  420
PEADGTSAVQ SYCPPRSDLV GSPCSQSFRF LSSLISVDCA TLLYGDEPNQ LFETQEEGFV  480
TGAHEGFIYT NDFTNSPSNN GTDNAGMQEQ PDVKETSKLV PVNTFGSGSD ITDTCPSVGE  540
RLHVHLEQQD AGALCYEPPR FPSLDIPFLS CDLIQSGSDT QQEYSPLGIR QLMMSSMNCI  600
TPFRLWDSPS RDDSPDAFLK SAAKTFTGTP SILKKRHRDL FSPLSDRRSD KKLEIDMTSS  660
LSRHFAHLDV VFDEISTQNA PFSPSSNRKR NFGASPMDKE NTDCAFKGAE GKGRDGTSSF  720
DDRNLEKNSD DSNLQGNTKQ PTADVDAKTK VQQSSGVLVE HNMNDLLLHS PDQVCSKADR  780
LLRSSSRTPR NKQSRSLAAA SDRGISNHLS SGNPCAHFRS PTLCGKKNES HSVAVTCTQS  840
ASSSAPLETA GHNVRNDAGV ETFGIFGGTP FKRSIESPSA WKSPWFINSF LPGPRVDTEI  900
TIEDIGYFMS PGDRSYDAIG LMKHISEHSA AAYANAQEVL GNETPKTLKK GKCNNHGSRD  960
QENSRVPYSH HGNRSHMAPT VLTECRTLDF SECGTPGKGT ENGKPSNAVS LSSSPSSYLL  1020
KNCR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-613616233159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-613616233159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811761.10.0PREDICTED: myb-related protein 3R-1-like isoform X2
TrEMBLA0A2I4DX840.0A0A2I4DX84_JUGRE; myb-related protein 3R-1-like isoform X2
STRINGcassava4.1_024255m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37273362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein