PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00025783-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 382aa    MW: 43496.5 Da    PI: 6.1039
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00025783-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-093093442055
                         HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
            Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                         +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  WALNUT_00025783-RA 309 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 344
                         4679*****************************885 PP
2ELK37.84e-13264285122
                 ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                         ELK++LlrKYsgyL+sLkqE+s
  WALNUT_00025783-RA 264 ELKNHLLRKYSGYLSSLKQELS 285
                         9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.2E-22113157IPR005540KNOX1
PfamPF037901.6E-22114156IPR005540KNOX1
SMARTSM012562.6E-23164222IPR005541KNOX2
PfamPF037912.3E-15184220IPR005541KNOX2
PROSITE profilePS5121311.296264284IPR005539ELK domain
PfamPF037892.7E-10264285IPR005539ELK domain
SMARTSM011883.5E-7264285IPR005539ELK domain
PROSITE profilePS5007113.216284347IPR001356Homeobox domain
SuperFamilySSF466891.03E-19285359IPR009057Homeodomain-like
SMARTSM003894.0E-12286351IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-26289350IPR009057Homeodomain-like
CDDcd000865.44E-12296348No hitNo description
PfamPF059201.5E-16304343IPR008422Homeobox KN domain
PROSITE patternPS000270322345IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MEEYHNQLNE NSGSRGNFLY VSPVLAANSS GYGRTSSGSN VGNQQTQIPI STFPLQSGGE  60
CFQSEAHPIV KTEASTSQHL QTFHYALMRG HPGIQQQQQQ QQQGNDSSNT DVEAIKGKII  120
AHPQYSNLLE AYMDCQKVGA PPEVVARLSA AREEFEARQR SSVTSRETTK DPELDQFMVT  180
PLLFLEAYYD MLVKYRDELN RPIQEAMDFM RRIEAQLNML GNGAVRVFSS EEKGEGVGSS  240
EEDQDNSGGE TELPEIDPRA EDRELKNHLL RKYSGYLSSL KQELSKKKKK AKLPKEARQK  300
LLSWWELHYK WPYPSETEKV ALAESTGLDQ KQINNWFINQ RKRHWKPSED MQFMVMDGLH  360
PQNATLYMDG HFMGDGHYRL GP
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018806314.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041350.0KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A2I4DGN80.0A0A2I4DGN8_JUGRE; homeobox protein knotted-1-like 2
STRINGEOY156240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45843246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-130KNOTTED-like from Arabidopsis thaliana