PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026083-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 185aa    MW: 20632 Da    PI: 10.2121
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026083-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00154668123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  WALNUT_00026083-RA 46 FECKTCNRQFTSFQALGGHRASH 68
                        89**********99999998887 PP
2zf-C2H2120.0006397119123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++C++Cg  F     L  H+r+H
  WALNUT_00026083-RA  97 HECSICGLKFAMGQALGGHMRRH 119
                         78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139123.1E-124570IPR007087Zinc finger, C2H2
SuperFamilySSF576673.51E-945119No hitNo description
PROSITE profilePS5015710.2214673IPR007087Zinc finger, C2H2
SMARTSM003550.24668IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804868IPR007087Zinc finger, C2H2
PfamPF139124.1E-1097120IPR007087Zinc finger, C2H2
PROSITE profilePS501579.3997124IPR007087Zinc finger, C2H2
SMARTSM003550.1697119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099119IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0071289Biological Processcellular response to nickel ion
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MAMKRMREDH GGKVESLDMA DCLMLLSHGL AANTTKPKTT SKVDVFECKT CNRQFTSFQA  60
LGGHRASHKR PRLMGPEEEQ REDGNKLQTS GKKPKMHECS ICGLKFAMGQ ALGGHMRRHR  120
PNHDGHGLSY VPDHDVGAKV PVAVMKRSNS SKRVVFLDLN LTPLENDLNL LFGKMAPKVD  180
LRLMI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018845762.11e-136PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A2I4GPD81e-134A0A2I4GPD8_JUGRE; zinc finger protein ZAT11-like
STRINGXP_002533000.12e-66(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.18e-48C2H2 family protein