PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026396-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ARR-B
Protein Properties Length: 580aa    MW: 65593.1 Da    PI: 6.0617
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026396-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73e-24199252155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  WALNUT_00026396-RA 199 KHRVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                         68*******************.9*******************************8 PP
2Response_reg79.89.1e-27191271109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+++l+k  y ev+++  +++al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge   + + 
  WALNUT_00026396-RA  19 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLARDALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETGRVMKG 107
                         89*********************.***************999999**********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ ++el++
  WALNUT_00026396-RA 108 VQHGACDYLLKPIRMKELRN 127
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521722.7E-3516139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.9E-4416139No hitNo description
SMARTSM004484.7E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.21418133IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.4E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.52E-3020133No hitNo description
SuperFamilySSF466894.66E-17197256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27197257IPR009057Homeodomain-like
TIGRFAMsTIGR015572.0E-21199252IPR006447Myb domain, plants
PfamPF002491.8E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MENGFSSPRN DSFPAGLRVL VVDDDPTWLK ILEKMLKKCS YEVTTCGLAR DALNLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TGRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVFRKKILEI RDIEGHESFE GIQISRNGSD LSDDGHMFCG EDMTSVKKRK  180
DFDNKHDEKD FGDHSSAKKH RVVWSVDLHQ KFVKAVNQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLSRLQKE SDLKASFGGI KHSDMHLKDP AGSFGLQSSI NTNQNDVANG  300
RYQFSAHKLF GQDVDVKIQE GDLKGIFSEH MPDTKKTLNA DNPDPQETSS QMSFDHSFAS  360
LGSEVNYEAF DCRIWSEAPK IELKREHKPL LQLEDGFSQL PPCAPEHHVK IDKLHPVPSV  420
TSGLSLTARD VSGPIKNEPL YAEYQSNRVS HVSPKKCESF PVQSSHMVVN HQSYESVSTA  480
ISSMKPQGFN LSCITDFDYS QRNLKASDST LAPFNETACL LQGDFHNKYF GLPNIEFTGC  540
NDPSFLAEIP VHWHDTLTSD YECPLDPTEY SIFDQGLFIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17195257163ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018820066.10.0PREDICTED: two-component response regulator ARR11-like isoform X1
TrEMBLA0A2I4EKZ10.0A0A2I4EKZ1_JUGRE; two-component response regulator ARR11-like isoform X1
STRINGXP_008221977.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-131response regulator 11