PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026458-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HSF
Protein Properties Length: 351aa    MW: 40308.7 Da    PI: 4.5278
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026458-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.7e-35161072102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Flkk ye+++de+++++isws++++ fv++d++ef+ ++LpkyFkhsnf+SF+RQLn+YgF+k++ ++         weF+++ F +g+k+
  WALNUT_00026458-RA  16 FLKKCYEMVDDEATDSIISWSQTSDGFVIWDMTEFSVRLLPKYFKHSNFSSFMRQLNIYGFRKIDMDR---------WEFANDGFVRGQKH 97 
                         9****************************************************************999.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i r+k+
  WALNUT_00026458-RA  98 LLKNIGRRKK 107
                         *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.1E-366100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-3312105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-5312105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.2E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVKKSAEDAS ASVPPFLKKC YEMVDDEATD SIISWSQTSD GFVIWDMTEF SVRLLPKYFK  60
HSNFSSFMRQ LNIYGFRKID MDRWEFANDG FVRGQKHLLK NIGRRKKLQQ PANSDGSGEK  120
IQNLGLWKEI ENLKTDKNAL MQELVKLRQH QETSDNKLLL LRDRLHGMEK NQQQMLSFLV  180
MAMQSPAFLV QMLRRMAETA SMLDVGTEDV RSVASDGMIV RYQPPVDETP KSVQTRNFIS  240
ENQEVDPSPD GLKDFLLNAD FLKMLTDEKL CSLDNHAPFI LPDLPDDGSW EQLLLASPFL  300
ENTEDGKLDS EEHNDYELEM ETSVSGGQLE TSREFELLIE QMEKSQTLGM E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-24910513120Heat shock factor protein 1
5d5u_B7e-24910522129Heat shock factor protein 1
5d5v_B7e-24910522129Heat shock factor protein 1
5d5v_D7e-24910522129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2158651e-42KT215865.1 Momordica charantia cultivar 24-K heat stress transcription factor A-8 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018836499.10.0PREDICTED: heat stress transcription factor A-8
SwissprotQ9S7U51e-100HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A2I4FXW20.0A0A2I4FXW2_JUGRE; heat stress transcription factor A-8
STRINGEOY013631e-155(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-102heat shock transcription factor A8