PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026606-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 547aa    MW: 60845.4 Da    PI: 9.0289
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026606-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.0015481503123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C ++F++   L  H r+H
  WALNUT_00026606-RA 481 HECPICFRVFRSGQALGGHKRSH 503
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.76E-6731No hitNo description
PfamPF139123.7E-5932IPR007087Zinc finger, C2H2
PROSITE profilePS501579.702936IPR007087Zinc finger, C2H2
SMARTSM003550.3931IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576677.76E-694121No hitNo description
SMARTSM003551.399121IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.99399126IPR007087Zinc finger, C2H2
PfamPF139128.5E-5100123IPR007087Zinc finger, C2H2
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PROSITE profilePS501579.037481503IPR007087Zinc finger, C2H2
PfamPF139123.3E-10481503IPR007087Zinc finger, C2H2
SMARTSM003550.17481503IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280483503IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MEEKHKKKFV CKFCNKRYPC GKALGGHIRT HMNQNSAEKE QVVEANADLV KFPSLDGGKN  60
SKRDSGPETA GWNSSYGLRE NPKRTWRFVD SGTGSLQERV CRECGKCFQS LKALCGHMAC  120
HSEKEKLISK FEDHSGTSEN QKPEMDTQSV TDTSAPRKLR RSKRMRYKTL DTYPSVYTLA  180
NGSSSVSEIE QEQEQEEAAM CLMMFSRDSV CRGGLNSVAE SSNNNSVVLE AKSSSIDLKI  240
TVKNVGNYVS DMNDFVNLKR RSDELKTSDV SLSDNSDSGY FRNGPKKAES DVSVDGSIAS  300
GEFKKPKVES GYGTGCFNAE LGKSSNRFKF VTSEFGKELI RNEGYGQVGR AFVMCNSRMK  360
SKNDSHSPEF LEGSHKKMKN VCSNIETFKN TQKRSKQECV NSKMCFHSRR AMGPHRASHT  420
QISGCRESVH DRGENNIETD SLPVPKPYSK TVESCGVKTS INRTMPVHSV KRLGTKKSKG  480
HECPICFRVF RSGQALGGHK RSHFFGGSGE GTIVLKQEVP EFHGLIDLNL PAPVEEEANG  540
PAEFMPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811061.10.0PREDICTED: uncharacterized protein LOC108983759
TrEMBLA0A2I4DV830.0A0A2I4DV83_JUGRE; uncharacterized protein LOC108983759
STRINGEOY017460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.13e-53C2H2-like zinc finger protein