PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026880-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 108aa    MW: 12001.3 Da    PI: 9.7855
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026880-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-092063344
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         WT+   +++ +a +++ ++   +W  +a+ +g g+++++++ ++
  WALNUT_00026880-RA 20 TWTPKQNKQFEKALALYDKDtpdRWQNVAKAVG-GKSAEEVRKHY 63
                        7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.4E-81769IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-131975IPR009057Homeodomain-like
PROSITE profilePS500906.2951967IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.5E-52068IPR009057Homeodomain-like
PfamPF002496.3E-82063IPR001005SANT/Myb domain
CDDcd001671.33E-52763No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MASSPFTSSS GSNCSSTSST WTPKQNKQFE KALALYDKDT PDRWQNVAKA VGGKSAEEVR  60
KHYEILVQDL INIESGQVPL PNYKTTGSNS RSGSGDEQIR RMKNLRLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-34211071192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018808667.13e-76PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1731e-43RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2I4DNF28e-75A0A2I4DNF2_JUGRE; protein RADIALIS-like 6
STRINGXP_008220818.13e-43(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-41RAD-like 6