PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00026914-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 343aa    MW: 38765.3 Da    PI: 6.5064
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00026914-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-141562148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg WT+ Ed++l+ ++k +G g W+  +++ g++R++k+c++rw++yl
  WALNUT_00026914-RA 15 RGTWTAIEDKILKGYIKIHGEGKWRNLPKRAGLKRCGKSCRLRWLNYL 62
                        89********************************************97 PP
2Myb_DNA-binding51.72e-1668111146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E+el+++++k+lG++ W++Ia +++ gRt++++k++w++
  WALNUT_00026914-RA  68 RGNITNDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 111
                         7999******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-21765IPR009057Homeodomain-like
PROSITE profilePS5129415.321062IPR017930Myb domain
SuperFamilySSF466893.79E-2712109IPR009057Homeodomain-like
SMARTSM007178.2E-121464IPR001005SANT/Myb domain
PfamPF002492.2E-121562IPR001005SANT/Myb domain
CDDcd001673.31E-91762No hitNo description
PROSITE profilePS5129423.88763117IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2366116IPR009057Homeodomain-like
SMARTSM007172.3E-1567115IPR001005SANT/Myb domain
PfamPF002491.9E-1468111IPR001005SANT/Myb domain
CDDcd001671.15E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MGRSPCCSKD QSLNRGTWTA IEDKILKGYI KIHGEGKWRN LPKRAGLKRC GKSCRLRWLN  60
YLRPEIKRGN ITNDEEELII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TNIGKNVLLG  120
HPNPTSKRRS SSSNQAQEKP NPTKASAVIE PPEANPGASC TVIRTKATRC TKVIPISTSG  180
PQEPHDHQQQ QQQFDHHTKP VVVEHPSLVL DENHDMTVEF SNCNLEENNL SNFMMDDFEL  240
DKSFLSEFLV NTDFSELSSC IENNNINNEG GSSSTTCDKV HSSPTFIDHA LLVSKETELH  300
GSEDFQLMSP LTDQSEYMDW LFVSKDTLHG SEVNSHDDQS QLT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857731.10.0PREDICTED: myb-related protein Zm38-like
TrEMBLA0A2I4HNJ70.0A0A2I4HNJ7_JUGRE; myb-related protein Zm38-like
STRINGXP_008228205.12e-97(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-60myb domain protein 4