PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027376-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 640aa    MW: 69461.5 Da    PI: 7.0814
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027376-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.5e-094294661954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  WALNUT_00027376-RA 429 FEHflHPYPTDTDKLMLAKETGLSRSQVSNWFINARVR 466
                         554459******************************88 PP
2BELL111.83.8e-36296365372
                BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          e+++kk++L+s+l+eV++rYkqy+eq+q+v+ sFe vaglg+a+pY++lA ka+S+hFrcLk+ai++q+
  WALNUT_00027376-RA 296 GEIRRKKSRLISMLDEVYRRYKQYYEQMQAVVTSFENVAGLGNAAPYANLAVKAMSKHFRCLKNAITDQL 365
                         6899***************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.0E-52231363IPR006563POX domain
PfamPF075265.0E-41236362IPR006563POX domain
PROSITE profilePS5007112.098407470IPR001356Homeobox domain
SMARTSM003894.0E-10410474IPR001356Homeobox domain
CDDcd000865.54E-13410471No hitNo description
SuperFamilySSF466899.41E-17412476IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-27413474IPR009057Homeodomain-like
PfamPF059201.4E-18427466IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VVISQNHHGD VVEPTTAANL QHCAGLLPLY DPALLSTDFV  60
SCANASAHEF HHQNLQLSGP TAEACKASGC SVKEESVNLM GFVGGMMNGA SSSSSAPHPS  120
YLDRHQNSLP NIPSSIQDIN SIPFLYPPRS LQNLRDFDQS YSGGEVMGFK PEPLSLSLSS  180
HATQQSNLPL ELNFQRYGSS TCGYVIPSIV GGSASASNDV SRSSVPLGPF TGYASVLKGS  240
RFLKPAQQLL EELCDFAGRG IYAEKIAADS SLMDSPMECL SSNGIVDTPL SCGDGGEIRR  300
KKSRLISMLD EVYRRYKQYY EQMQAVVTSF ENVAGLGNAA PYANLAVKAM SKHFRCLKNA  360
ITDQLQFTNK ARDHGTHGKD EASRSGNNDR GLYCQRPVHS SGFLEHQPVW RPQRGLPERA  420
VTVLRAWLFE HFLHPYPTDT DKLMLAKETG LSRSQVSNWF INARVRLWKP MVEEIHTLET  480
RQAQKASQRD ERTASRSNDH LSSANTHGSN NPTPSNQRVQ DTPSKRTRNE VPDIPLVGSE  540
EAHNLSFNFS CHSHAGGGVG VGVSMAGGSG GGGGGVSLTL GLHQNNGIGL SENFPIINAA  600
QRIGLGLETN GEGYVMGGFE SHNRNFGDVI GGQLLHDFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17416473158Homeobox protein Meis1
4xrs_B4e-17416473158Homeobox protein Meis1
5bng_A4e-17416474159Homeobox protein Meis2
5bng_B4e-17416474159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850968.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-118BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2I4H4A20.0A0A2I4H4A2_JUGRE; BEL1-like homeodomain protein 9
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.11e-113TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]