PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027378-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family TALE
Protein Properties Length: 334aa    MW: 37392.9 Da    PI: 9.7633
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027378-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.4e-101311681954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  WALNUT_00027378-RA 131 FEHflHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVR 168
                         664459******************************88 PP
2BELL82.74.7e-2715672072
                BELL 20 dkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                         +rYkqy++q+q+v++sFe vaglg+a+pY++lA ka+S+hFrcLk+ i++q+
  WALNUT_00027378-RA 15 SRRYKQYYQQMQAVVASFEYVAGLGNAAPYANLAVKAMSKHFRCLKNVITDQL 67
                        58************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.3E-4165IPR006563POX domain
PfamPF075263.0E-221564IPR006563POX domain
PROSITE profilePS5007112.098109172IPR001356Homeobox domain
SMARTSM003893.4E-10112176IPR001356Homeobox domain
CDDcd000865.39E-13112173No hitNo description
SuperFamilySSF466892.01E-17114179IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.4E-28115176IPR009057Homeodomain-like
PfamPF059204.9E-19129168IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MSENNFGIPQ LRHRSRRYKQ YYQQMQAVVA SFEYVAGLGN AAPYANLAVK AMSKHFRCLK  60
NVITDQLQFT SKAQGHAVHG KDEGPRFGST ERGLHYQRPV HDSGFLEHQP VWRPQRGLPE  120
RAVTVLRAWL FEHFLHPYPT DTDKLMLAKQ TGLSRSQVSN WFINARVRLW KPMVEEIHML  180
ETRQSQKSLQ RDDRSGNRSS DHLTSANSLV SDNPSTPAQR VQDNPSKRTR NEVPDIPVGS  240
EEPQHLSYNF SSHSHVGIGM SMAGGSSGVS LTLGLHQNNG IGLSEPFPIN AVQRYGLGLD  300
TSAEGYVMGG FESHNRHFGR GDVIGGQLLH DFVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16118176563Homeobox protein Meis2
3k2a_B4e-16118176563Homeobox protein Meis2
4xrs_A4e-16118175158Homeobox protein Meis1
4xrs_B4e-16118175158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018850973.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM86e-89BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2I4H4A70.0A0A2I4H4A7_JUGRE; BEL1-like homeodomain protein 9
STRINGEOY073830.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28103373
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.15e-85TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]