PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00027529-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

S1Fa-like

Protein Properties

Length: 89aa MW: 10036 Da PI: 10.3395

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00027529-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	133.9	3.8e-42	23	89	4	70
S1FA 4 akveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 + +eakG+nPGlivllvv glll+flvgny+ly+yaqk+lPPrkkkP+skkk+++e+lkqGv++PGe WALNUT_00027529-RA 23 KDAEAKGFNPGLIVLLVVVGLLLIFLVGNYVLYIYAQKTLPPRKKKPISKKKMRKERLKQGVSAPGE 89 568***************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	0.009	21	89	No hit	No description
Pfam	PF04689	1.6E-40	25	89	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MDEEFDFTDK VPPSFDRMGN VIKDAEAKGF NPGLIVLLVV VGLLLIFLVG NYVLYIYAQK 60 TLPPRKKKPI SKKKMRKERL KQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018847883.1	6e-58	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q7XLX6	7e-17	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A2I4GVG4	1e-56	A0A2I4GVG4_JUGRE; DNA-binding protein S1FA-like
STRING	Lus10015073	4e-33	(Linum usitatissimum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]