PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027605-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 93aa    MW: 10569.3 Da    PI: 9.9329
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027605-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.8e-302582359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY  3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                        D y+WrKYG K++kg ++pr+YY+C+s  gCpv+k+ver+ +dp++++++YegeHnh+
  WALNUT_00027605-RA 25 DDYSWRKYGHKPIKGFPHPRGYYKCSSLgGCPVRKHVERTLDDPTMLVVIYEGEHNHS 82
                        99*************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.5E-6321IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.806.7E-311382IPR003657WRKY domain
PROSITE profilePS5081128.2421884IPR003657WRKY domain
SuperFamilySSF1182908.63E-262182IPR003657WRKY domain
SMARTSM007747.1E-332383IPR003657WRKY domain
PfamPF031062.9E-252581IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    Send to blast
MIKSKVKRVI RVPAISPKMA DIPLDDYSWR KYGHKPIKGF PHPRGYYKCS SLGGCPVRKH  60
VERTLDDPTM LVVIYEGEHN HSNSLTEATV AHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-201181271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001312390.17e-49probable WRKY transcription factor 7
RefseqXP_009775593.17e-49PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX03e-43WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A1U7WAC72e-47A0A1U7WAC7_NICSY; probable WRKY transcription factor 7
TrEMBLQ9FXS12e-47Q9FXS1_TOBAC; WRKY transcription factor NtEIG-D48
STRINGXP_009775593.13e-48(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13143498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.11e-45WRKY DNA-binding protein 7