PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027735-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 204aa    MW: 23116.2 Da    PI: 6.7986
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027735-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.4e-091564555
                        HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHHH CS
                 HLH  5 hnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksLq 55
                          ++E++RR++++  +++L +llP+ +   +++   s  +   +A++YI sL+
  WALNUT_00027735-RA 15 RRIIEKNRRNQMKVLYSRLNSLLPNpD---SKEAvHSLPDQIDEAINYITSLE 64
                        579**********************44...44446**************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-10887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.87E-5865No hitNo description
PROSITE profilePS5088811.4521063IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-91381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-51564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-41669IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MDHQRSQSSS TKVERRIIEK NRRNQMKVLY SRLNSLLPNP DSKEAVHSLP DQIDEAINYI  60
TSLETKLKKS KEKKESLTSR KKRPYTCTNF EETAGLKSPK IEIRETGSTL EIVLITGLDN  120
QFIFYEMIHI LHGEQAEVLN ASFSTSGDSV LHVVHAETVG CSFDFGAAKV TERLKRLVYG  180
STSDVELSPD LWDLIPINSE AWGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16783KKSKEKKESLTSRKKRP
26881KSKEKKESLTSRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842915.11e-151PREDICTED: uncharacterized protein LOC109007619
TrEMBLA0A2I4GG901e-149A0A2I4GG90_JUGRE; uncharacterized protein LOC109007619
STRINGEMJ000633e-81(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.15e-27bHLH family protein