PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028020-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 244aa    MW: 27285.4 Da    PI: 6.3705
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028020-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-19121169355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GVr+++ +g+W+AeIrdp+    r  r++lg+f tae+Aa+a+++a+ +++g
  WALNUT_00028020-RA 121 YRGVRQRP-WGKWAAEIRDPR----RaVRVWLGTFATAEQAARAYDRAAIEFRG 169
                         9*******.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.067120177IPR001471AP2/ERF domain
PfamPF008471.1E-13120169IPR001471AP2/ERF domain
SMARTSM003801.9E-39120183IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-32120178IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-22120179IPR016177DNA-binding domain
CDDcd000189.08E-34120179No hitNo description
PRINTSPR003671.2E-11121132IPR001471AP2/ERF domain
PRINTSPR003671.2E-11143159IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MTSRLDHTGM PSPATPCSVS LEVEHEIMVS ALKHVISGGG IDDVTRELQL QLLLPAASSL  60
NATSSSFPST SWTNCTNRML PLSDGVPRPV CNSNDCSGCN SNIHTSEKKT TKKKKKEKRN  120
YRGVRQRPWG KWAAEIRDPR RAVRVWLGTF ATAEQAARAY DRAAIEFRGT RAKLNFPVSD  180
YNTEKRQSAE HEEAREQKPN EANESNKTEA TSETEINAVG ESSMEEELWD LFTEDELRGI  240
MNEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23119178161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00289DAPTransfer from AT2G33710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811264.10.0PREDICTED: ethylene-responsive transcription factor ERF109-like
TrEMBLA0A2I4DVT90.0A0A2I4DVT9_JUGRE; ethylene-responsive transcription factor ERF109-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.13e-23ERF family protein