PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00028027-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

M-type_MADS

Protein Properties

Length: 210aa MW: 24509.8 Da PI: 6.05

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028027-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.8	1.2e-22	26	70	5	49
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++s++qvtfskRr+g++KKA EL+vLC+aeva+i+fs++++++ + WALNUT_00028027-RA 26 EESKKQVTFSKRRAGLFKKAGELCVLCGAEVAIIVFSPHNNVFCF 70 6799************************************99866 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	24.32	14	74	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-27	14	73	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.62E-26	15	92	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.45E-31	15	86	No hit	No description
PRINTS	PR00404	5.0E-18	16	36	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.2E-22	26	70	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-18	36	51	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.0E-18	51	72	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MVIQKKMSEG KKTRGRQRIE IKELAEESKK QVTFSKRRAG LFKKAGELCV LCGAEVAIIV 60 FSPHNNVFCF GHPDVETVLD HYLTGNHSSF SHTSSSDLHD QNLNNLNNVA AAELMNRQYA 120 EAQEELGREK KRLVEIEEEV KRKKMENNGE YLWWEEAVHE NMELEEMEHY MSALQEMRWK 180 VGSRLEQFRM MRSATHDDAC AWDSWETMLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3kov_A	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3kov_B	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3kov_I	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3kov_J	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3p57_A	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3p57_B	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3p57_C	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3p57_D	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3p57_I	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
3p57_J	2e-16	15	95	1	81	Myocyte-specific enhancer factor 2A
5f28_A	2e-16	15	95	2	82	MEF2C
5f28_B	2e-16	15	95	2	82	MEF2C
5f28_C	2e-16	15	95	2	82	MEF2C
5f28_D	2e-16	15	95	2	82	MEF2C
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	143	KKRLVEIEEEVKRKK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018809126.1	1e-151	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_018809127.1	1e-151	PREDICTED: agamous-like MADS-box protein AGL61
Refseq	XP_018809128.1	1e-151	PREDICTED: agamous-like MADS-box protein AGL61
TrEMBL	A0A2I4DPQ0	1e-150	A0A2I4DPQ0_JUGRE; agamous-like MADS-box protein AGL61
STRING	EMJ20977	9e-51	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF128	33	331

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24840.1	1e-33	AGAMOUS-like 61