PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028153-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family C2H2
Protein Properties Length: 192aa    MW: 21420.4 Da    PI: 9.1461
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028153-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.00174567123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F++   L  H  +H
  WALNUT_00028153-RA 45 FECKTCNRQFPSFQALGGHRASH 67
                        89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.71E-943115No hitNo description
PfamPF139123.3E-134469IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274572IPR007087Zinc finger, C2H2
SMARTSM003550.164567IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
PfamPF139121.4E-992116IPR007087Zinc finger, C2H2
PROSITE profilePS501578.91293115IPR007087Zinc finger, C2H2
SMARTSM003550.593115IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MKRSTTEREL DHNMTMANCL MLLSRGGEIA MDAFSHDSST PSRVFECKTC NRQFPSFQAL  60
GGHRASHKKP RLMGGDESLD SQSDGSPTKP KTHECSICGL EFAIGQALGG HMRRHRTTLT  120
TDHIQNQVPF NLKQNLQQAA PLGRTNSSQV RIVKKTSTSR RVLFLDLNLT PFENDLEYLK  180
LGKAAPMVDC FL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810023.11e-142PREDICTED: zinc finger protein ZAT11-like
RefseqXP_018836539.11e-142PREDICTED: zinc finger protein ZAT11-like
TrEMBLA0A2I4DS941e-141A0A2I4DS94_JUGRE; zinc finger protein ZAT11-like
STRINGXP_008371383.19e-72(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.13e-41C2H2 family protein