PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028165-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB
Protein Properties Length: 260aa    MW: 28821.4 Da    PI: 6.9446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028165-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-181661147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        +g+W+++Ed  l+ +v+ +G+++W++I++ ++ gR++k+c++rw + 
  WALNUT_00028165-RA 16 KGSWSPQEDATLISLVENHGPRNWSLISQGIP-GRSGKSCRLRWCNQ 61
                        799*****************************.***********985 PP
2Myb_DNA-binding52.11.5e-1670112347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         ++T+ Ed +++ a+  +G++ W+tIar ++ gRt++ +k++w++ 
  WALNUT_00028165-RA  70 PFTPAEDAIIYTAHSIHGNR-WATIARLLP-GRTDNAIKNHWNST 112
                         89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5541166IPR017930Myb domain
SuperFamilySSF466891.35E-2914109IPR009057Homeodomain-like
SMARTSM007171.4E-141564IPR001005SANT/Myb domain
PfamPF002494.7E-181661IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-241769IPR009057Homeodomain-like
CDDcd001676.51E-141860No hitNo description
SMARTSM007171.7E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129420.62567117IPR017930Myb domain
PfamPF002491.1E-1370112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-2270116IPR009057Homeodomain-like
CDDcd001671.84E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKMTSLQKIG GDHRLKGSWS PQEDATLISL VENHGPRNWS LISQGIPGRS GKSCRLRWCN  60
QLSPEVQHRP FTPAEDAIIY TAHSIHGNRW ATIARLLPGR TDNAIKNHWN STLRRRRDSS  120
SESNSGAKRL GGPDAAISPT ASVEWDSGVS KRQCLSAPPE HTGPDEEEDL AGLEDTSLTL  180
SLSLTAGKKM KEKEEEVVKV EEVARIVRNE EEEEGTCLVT IMQRMVAAEV RSYIDHLRAE  240
NGLGPPCLPA QKDPYEIRKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-39151163104MYB PROTO-ONCOGENE PROTEIN
1h88_C5e-39711649158MYB PROTO-ONCOGENE PROTEIN
1h89_C5e-39711649158MYB PROTO-ONCOGENE PROTEIN
1mse_C3e-39151163104C-Myb DNA-Binding Domain
1msf_C3e-39151163104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018846327.10.0PREDICTED: transcription factor MYB44-like
SwissprotO231601e-50MYB73_ARATH; Transcription factor MYB73
TrEMBLA0A2I4GR170.0A0A2I4GR17_JUGRE; transcription factor MYB44-like
STRINGVIT_13s0067g01360.t011e-83(Vitis vinifera)
STRINGcassava4.1_022961m2e-83(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116002935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.14e-49myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]