PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00028337-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

C2H2

Protein Properties

Length: 343aa MW: 37620.7 Da PI: 6.7297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028337-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.7	0.00081	152	174	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H WALNUT_00028337-RA 152 YECKTCNRTFPSFQALGGHRASH 174 99**********99999998887 PP
2	zf-C2H2	13.1	0.00029	231	253	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H WALNUT_00028337-RA 231 HECSICGAEFTSGQALGGHMRRH 253 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	3.2E-13	151	176	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.07E-9	151	174	No hit	No description
PROSITE profile	PS50157	10.637	152	179	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.052	152	174	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	154	174	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	9.07E-9	226	253	No hit	No description
Pfam	PF13912	5.1E-13	230	255	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.01	231	253	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.723	231	253	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	233	253	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence Send to blast
MEAAQEEAIL RSKENNTHVV IKGKRTKRQR PQSPIPLIPS ITANSTSHVD PDGEGCGGGG 60 GCDGGDQSND IANDNMTSFS PATSAEILQE STEEEEDMAN CLILLAQGQS RESPKQVEED 120 HADGGGGVYK FNSRRFLEAA ATGTGKAGYY VYECKTCNRT FPSFQALGGH RASHKKPKAA 180 AMSAEEKSSK QFLLSSDEEE AQFKKNDHLS SIFFQSSSRG LCGNNRSNKV HECSICGAEF 240 TSGQALGGHM RRHRAPITGN KFNTTLTFTP PPMAPLEPDQ EPKKPRRTVI SLDLDLNLPA 300 PEDDHREPKF PFATKQQQQQ QQQQKQQQPP IVFSARTLVD CHY

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence Send to blast

MEAAQEEAIL RSKENNTHVV IKGKRTKRQR PQSPIPLIPS ITANSTSHVD PDGEGCGGGG  60
GCDGGDQSND IANDNMTSFS PATSAEILQE STEEEEDMAN CLILLAQGQS RESPKQVEED  120
HADGGGGVYK FNSRRFLEAA ATGTGKAGYY VYECKTCNRT FPSFQALGGH RASHKKPKAA  180
AMSAEEKSSK QFLLSSDEEE AQFKKNDHLS SIFFQSSSRG LCGNNRSNKV HECSICGAEF  240
TSGQALGGHM RRHRAPITGN KFNTTLTFTP PPMAPLEPDQ EPKKPRRTVI SLDLDLNLPA  300
PEDDHREPKF PFATKQQQQQ QQQQKQQQPP IVFSARTLVD CHY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018808473.1	0.0	PREDICTED: zinc finger protein ZAT5-like
TrEMBL	A0A2I4DMV7	0.0	A0A2I4DMV7_JUGRE; zinc finger protein ZAT5-like
STRING	EOY18851	1e-115	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF586	34	141

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	2e-64	C2H2 family protein