PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00028605-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

LBD

Protein Properties

Length: 164aa MW: 18134.5 Da PI: 6.087

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00028605-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.6	1.2e-39	2	96	4	98
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCk+l+r+C+++C++apyf++++p+kfanvhk+FGasnv+k+l+++pee+red+++sl+yeAear+rdPvyG++g i+ lq+++ +l+++la WALNUT_00028605-RA 2 ACKLLKRRCTPKCIFAPYFCSDEPSKFANVHKVFGASNVSKILTEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAITLLQRKMVELQHDLAI 94 9******************************************************************************************98 PP DUF260 97 lk 98 ++ WALNUT_00028605-RA 95 AR 96 87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.603	1	99	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.0E-39	2	96	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MACKLLKRRC TPKCIFAPYF CSDEPSKFAN VHKVFGASNV SKILTEVPEE QREDTVNSLA 60 YEAEARLRDP VYGCIGAITL LQRKMVELQH DLAIARACLA RYAASSSSSA SSCSSSLVWD 120 DHVIMPPYPD VPACNDPNYS FSQNSSDLTQ YGPVNDFSHS PYVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-45	2	103	14	115	LOB family transfactor Ramosa2.1
5ly0_B	5e-45	2	103	14	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018851818.1	1e-118	PREDICTED: LOB domain-containing protein 21-like
Swissprot	Q9SRL8	7e-53	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2I4H6P3	1e-117	A0A2I4H6P3_JUGRE; LOB domain-containing protein 21-like
STRING	XP_010067552.1	1e-76	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	2e-51	LOB domain-containing protein 21

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]