PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029093-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 170aa    MW: 18335.5 Da    PI: 5.0355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029093-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-171969155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr++k +g+Wv+eIr+p   g +  r +lg+f t+e Aa a++ a  +l+g
  WALNUT_00029093-RA 19 KKYKGVRQRK-WGKWVSEIRVP---G-SqERLWLGSFATPEAAAVARDVAYYCLRG 69
                        59*******9.**********8...4.35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.05E-241979No hitNo description
Gene3DG3DSA:3.30.730.101.2E-252079IPR001471AP2/ERF domain
PROSITE profilePS5103221.0612079IPR001471AP2/ERF domain
SMARTSM003807.7E-272085IPR001471AP2/ERF domain
SuperFamilySSF541714.71E-182079IPR016177DNA-binding domain
PfamPF008471.9E-82069IPR001471AP2/ERF domain
PRINTSPR003678.6E-92132IPR001471AP2/ERF domain
PRINTSPR003678.6E-94359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSCSEERGAN TGASTSQQKK YKGVRQRKWG KWVSEIRVPG SQERLWLGSF ATPEAAAVAR  60
DVAYYCLRGS STLDNLNFPL MLPSGVRPGL SPRSVQKAAS DAGLAIDAQL IANKLPENEG  120
LKDDKSGHVG AHGLETGCWE LAGDNCGTWE GSELKEGDDQ AFSICIEDYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-151685169ATERF1
3gcc_A2e-151685169ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018811455.11e-124PREDICTED: ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I81e-39ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A2I4DWE71e-122A0A2I4DWE7_JUGRE; ethylene-responsive transcription factor ERF020-like
STRINGXP_008219092.15e-59(Prunus mume)
STRINGPOPTR_0013s10420.14e-59(Populus trichocarpa)
STRINGEMJ278944e-59(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.15e-42ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]