PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029434-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 468aa    MW: 52813.6 Da    PI: 6.6339
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029434-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.92.9e-126464651374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPi 90 
                         l++lL +cA +v++g+ e+a+  L++ s+las dg++mqR+aayf+eALa r+++ s ++l kal++++ s  + se+++++klf+e++P+
  WALNUT_00029434-RA  46 LIQLLQACAYHVAAGSIENADIGLEHSSHLASADGNAMQRIAAYFAEALADRMLKaSRPGLHKALNSTKIS--SLSEKVFVQKLFFELCPF 134
                         689****************************************************999*******999998..599*************** PP

                GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                         lk++++++NqaI ea+ege++vHiiD+   +++QW+ +lq++++Rpegpp+lRiTg+++    +ke le+++ rL+  Ae+l++pf+f + 
  WALNUT_00029434-RA 135 LKVAYVITNQAIIEAMEGEKMVHIIDLYSFEPAQWIDFLQTISARPEGPPHLRITGIHE----HKEVLEQMALRLTVEAERLDIPFRFIP- 220
                         ***********************************************************....9**************************. PP

                GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrll.....................................................desvs 219
                         + ++ledl+le+L vk+gEalaV++vlqlh+ll                                                       s s
  WALNUT_00029434-RA 221 ILSKLEDLDLESLGVKTGEALAVSSVLQLHSLLaadeevlrrnspslskslpkvfhldqrtlreflekdpinvymaspdsastsspY-SPS 310
                         799****************************************************************************99987632.333 PP

                GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhe 310
                          + + +++L+ ++ lsPk++vv+eqea+hn+ +++er + al++y+alfdsle++++r   er+k+E+ l+g+ei+n++acegaer+erhe
  WALNUT_00029434-RA 311 ASPRMRTFLNSLWALSPKLMVVTEQEANHNGFTLMERAIGALHFYAALFDSLESTVSRLPIERQKIEKTLFGEEIKNIIACEGAERKERHE 401
                         3336899************************************************************************************ PP

                GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                         +lekW +rle+a F+ vp+s++   q+++ll+ ++++gy++++e+++lv++W++rpL+svSaWr
  WALNUT_00029434-RA 402 KLEKWIARLESARFGRVPFSYHSRLQVSRLLKSYGDNGYNIKDENDCLVICWNERPLFSVSAWR 465
                         ***************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.86820445IPR005202Transcription factor GRAS
PfamPF035149.9E-12446465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MAGTFQEDGS SLNSSPLFPW MSLSPGSGSP YAWLKELKTE ERGLYLIQLL QACAYHVAAG  60
SIENADIGLE HSSHLASADG NAMQRIAAYF AEALADRMLK ASRPGLHKAL NSTKISSLSE  120
KVFVQKLFFE LCPFLKVAYV ITNQAIIEAM EGEKMVHIID LYSFEPAQWI DFLQTISARP  180
EGPPHLRITG IHEHKEVLEQ MALRLTVEAE RLDIPFRFIP ILSKLEDLDL ESLGVKTGEA  240
LAVSSVLQLH SLLAADEEVL RRNSPSLSKS LPKVFHLDQR TLREFLEKDP INVYMASPDS  300
ASTSSPYSPS ASPRMRTFLN SLWALSPKLM VVTEQEANHN GFTLMERAIG ALHFYAALFD  360
SLESTVSRLP IERQKIEKTL FGEEIKNIIA CEGAERKERH EKLEKWIARL ESARFGRVPF  420
SYHSRLQVSR LLKSYGDNGY NIKDENDCLV ICWNERPLFS VSAWRFRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-56294671380Protein SCARECROW
5b3h_D1e-56294671380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018858211.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2I4HPY00.0A0A2I4HPY0_JUGRE; scarecrow-like protein 3
STRINGXP_002513107.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-178scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]