PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00029471-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

Trihelix

Protein Properties

Length: 476aa MW: 54100.2 Da PI: 6.8601

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00029471-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	79.3	5.5e-25	108	208	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsess 76 +Wt+ +v++Li a+ +m++++ ++ +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++ WALNUT_00029471-RA 108 KWTDTMVRLLIMAVYYMGDESMSEGtdptgnkkksagllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVV 198 7**************9887754336677788999999******************************************559* PP trihelix 77 stcpyfdqle 86 ++ ++++ ++ WALNUT_00029471-RA 199 ENQSLLETMD 208 ****999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.7E-22	106	233	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MEPNGLGGGM FPNIGSGMLG LELPLQQQQP QPQQQKSPAN PHHGLRNNHL QMVSYPHHET 60 DHNPPQSQQS VKHPIYASKP KQAIALSDED DDNSGDAKRK MSPWQRMKWT DTMVRLLIMA 120 VYYMGDESMS EGTDPTGNKK KSAGLLQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK 180 RYKRVNDILG KGTACKVVEN QSLLETMDLS PKMKEEVRKL LNSKHLFFRE MCAYHNSCGH 240 GSAGGAGGGA SQSPDQVATE PSHTQQQQAQ QQRCFHLAEN AGMCAEGSKL VKGGNGEEEE 300 DDEDDDDSDE YEDEDGVESG SRGHSGHGHD QDEDDNDEKS SRKRARKGVF FTSSQLVQQL 360 SCEVVSVLQD VGKSPWEKKQ WMRTRLIQLE EQQVSYRGRS FELEKQRLKW VKFSSKKERE 420 MERAKLENER RRLENERMSL LLRQKEMELL DHHHQQQQHL QHSSTNKRGE PSSITG

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MEPNGLGGGM FPNIGSGMLG LELPLQQQQP QPQQQKSPAN PHHGLRNNHL QMVSYPHHET  60
DHNPPQSQQS VKHPIYASKP KQAIALSDED DDNSGDAKRK MSPWQRMKWT DTMVRLLIMA  120
VYYMGDESMS EGTDPTGNKK KSAGLLQKKG KWKSVSRAMM EKGFYVSPQQ CEDKFNDLNK  180
RYKRVNDILG KGTACKVVEN QSLLETMDLS PKMKEEVRKL LNSKHLFFRE MCAYHNSCGH  240
GSAGGAGGGA SQSPDQVATE PSHTQQQQAQ QQRCFHLAEN AGMCAEGSKL VKGGNGEEEE  300
DDEDDDDSDE YEDEDGVESG SRGHSGHGHD QDEDDNDEKS SRKRARKGVF FTSSQLVQQL  360
SCEVVSVLQD VGKSPWEKKQ WMRTRLIQLE EQQVSYRGRS FELEKQRLKW VKFSSKKERE  420
MERAKLENER RRLENERMSL LLRQKEMELL DHHHQQQQHL QHSSTNKRGE PSSITG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018805936.1	0.0	PREDICTED: kinesin-related protein 4-like isoform X1
TrEMBL	A0A2I4DFK5	0.0	A0A2I4DFK5_JUGRE; kinesin-related protein 4-like isoform X1
STRING	XP_004303047.1	0.0	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4820	34	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	7e-70	sequence-specific DNA binding transcription factors