PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00029516-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

NF-YB

Protein Properties

Length: 155aa MW: 17639.5 Da PI: 5.09

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00029516-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	156	6.4e-49	5	99	3	97
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 +q+r+lPianv+rimk++lPa +kisk+ k+t+qec++efisfvt+easdkc++e+rkt+ngdd++wal+tlGf++y+e++ yl kyre+e+ WALNUT_00029516-RA 5 QQERLLPIANVGRIMKQILPATTKISKEGKQTMQECATEFISFVTAEASDKCHKENRKTVNGDDICWALSTLGFDNYAEAIVRYLYKYREAER 97 799*****************************************************************************************9 PP NF-YB 96 ek 97 +k WALNUT_00029516-RA 98 QK 99 86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-49	4	130	IPR009072	Histone-fold
SuperFamily	SSF47113	4.94E-38	6	129	IPR009072	Histone-fold
Pfam	PF00808	5.4E-25	9	73	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	4.8E-18	37	55	No hit	No description
PRINTS	PR00615	4.8E-18	56	74	No hit	No description
PRINTS	PR00615	4.8E-18	75	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 155 aa Download sequence Send to blast
MDDDQQERLL PIANVGRIMK QILPATTKIS KEGKQTMQEC ATEFISFVTA EASDKCHKEN 60 RKTVNGDDIC WALSTLGFDN YAEAIVRYLY KYREAERQKA NQNKGINSSQ DKQLEESNYR 120 NDQLGKQTHE DPHAPLEFRA IDEKGDHSQA EAAST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	7e-39	5	94	3	92	Transcription factor HapC (Eurofung)
4g92_B	7e-39	5	94	3	92	Transcription factor HapC (Eurofung)
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00133	DAP	Transfer from AT1G09030	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018843553.1	1e-114	PREDICTED: nuclear transcription factor Y subunit B-4-like
Refseq	XP_018858115.1	1e-114	PREDICTED: nuclear transcription factor Y subunit B-4-like
Swissprot	O04027	4e-58	NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBL	A0A2I4GI23	1e-113	A0A2I4GI23_JUGRE; nuclear transcription factor Y subunit B-4-like
STRING	cassava4.1_026425m	2e-69	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF805	32	131

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09030.1	2e-60	nuclear factor Y, subunit B4

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]