PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00029689-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family HD-ZIP
Protein Properties Length: 283aa    MW: 31668.7 Da    PI: 7.885
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00029689-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-19134188256
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         rk+ ++tkeq  +Le+ F+++ +++ +++++LA++l+L  rqV vWFqNrRa+ k
  WALNUT_00029689-RA 134 RKKLRLTKEQSAVLEDSFKEHATLNPKQKKDLAQQLNLRPRQVEVWFQNRRARTK 188
                         78889************************************************98 PP
2HD-ZIP_I/II122.22.5e-39134223191
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kk+rl+keq+++LE+sF+e+ +L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e Lk+++++l+een+rL+ke +eL+ +l
  WALNUT_00029689-RA 134 RKKLRLTKEQSAVLEDSFKEHATLNPKQKKDLAQQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKRCESLTEENKRLQKELQELK-SL 223
                         69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-18130191IPR009057Homeodomain-like
PROSITE profilePS5007117.605130190IPR001356Homeobox domain
SMARTSM003891.3E-17132194IPR001356Homeobox domain
CDDcd000861.99E-16133191No hitNo description
Gene3DG3DSA:1.10.10.602.9E-18133193IPR009057Homeodomain-like
PfamPF000467.0E-17134188IPR001356Homeobox domain
PROSITE patternPS000270165188IPR017970Homeobox, conserved site
SMARTSM003404.5E-19190235IPR003106Leucine zipper, homeobox-associated
PfamPF021836.2E-9190224IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGDLEDVRNT GLALALGSHE KPENHLQLDH QEKKKGKKEK FSLKYDNLFP SLTLGPSEVL  60
ETTTYGQLPD TKMDVGKVCG ESVDLQKQAS SVSGVSSFSN SSSIKKERES GGEEVEVERV  120
SSRVSDEDEE ASPRKKLRLT KEQSAVLEDS FKEHATLNPK QKKDLAQQLN LRPRQVEVWF  180
QNRRARTKLK QTEVDCELLK KRCESLTEEN KRLQKELQEL KSLKSTIAAP FYMQLPAATL  240
TLCPSCERVS SAGDGSSTNP FSIGAPKPQY FYNPSPIHQQ LAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182190RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018844619.11e-113PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-71HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2N9GW231e-118A0A2N9GW23_FAGSY; Uncharacterized protein
STRINGEOY156251e-105(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.14e-51HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]