PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

WALNUT_00030061-RA

Organism

Juglans regia

Taxonomic ID

51240

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans

Family

M-type_MADS

Protein Properties

Length: 73aa MW: 8457.96 Da PI: 10.7802

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
WALNUT_00030061-RA	genome	JHU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	58.6	7.6e-19	26	59	5	38
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevavi 38 ++s++qvtfskRr+g++KKA EL+vLC+aeva++ WALNUT_00030061-RA 26 EESKKQVTFSKRRAGLFKKAGELCVLCGAEVAML 59 5789***************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	19.82	14	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.16E-18	14	59	IPR002100	Transcription factor, MADS-box
SMART	SM00432	8.6E-14	14	70	IPR002100	Transcription factor, MADS-box
CDD	cd00120	6.39E-18	15	57	No hit	No description
PRINTS	PR00404	2.9E-10	16	36	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.0E-17	26	59	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.9E-10	36	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 73 aa Download sequence Send to blast
MVIQKKMSEG KKTRGRQRIE IMELAEESKK QVTFSKRRAG LFKKAGELCV LCGAEVAMLG 60 TLKWREENTN WRN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269\|PubMed:18334668}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018857898.1	4e-29	PREDICTED: agamous-like MADS-box protein AGL61
Swissprot	Q9FKK2	5e-17	AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBL	A0A2I4HP27	9e-28	A0A2I4HP27_JUGRE; agamous-like MADS-box protein AGL61
STRING	XP_004496799.1	2e-17	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-19	AGAMOUS-like 62

Publications ? help Back to Top
Xu W, et al. Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds. Plant Cell, 2016. 28(6): p. 1343-60 [PMID:27233529] Figueiredo DD,Batista RA,Roszak PJ,Köhler C Auxin production couples endosperm development to fertilization. Nat Plants, 2015. 1: p. 15184 [PMID:27251719] Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C Auxin production in the endosperm drives seed coat development in Arabidopsis. Elife, 2017. [PMID:27848912] Fiume E,Coen O,Xu W,Lepiniec L,Magnani E Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal. Plant Signal Behav, 2017. 12(8): p. e1339000 [PMID:28613109] Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]